G248849


Basic Information

Item Value
gene id G248849
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34048439 ~ 34071862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU283902
atgtctctatcagttttgcacatcgagagactgacattttttcccattcctctttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttagccattctaacacctggatatgtttatttttgaaccattccattgtagattttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactctgccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctctttgctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttcc
>TU283903
atgtctctatcagttttgcacatcgagagactgacattttttcccattcctctttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttagccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactctgccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctctttgctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttcc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283902 False 804 lncRNA 0.44 3 34048439 34071862
TU283903 True 816 lncRNA 0.44 3 34048439 34071862

Neighbor

gene id symbol gene type direction distance location
fbxl4 LOC106605030 coding upstream 7282 34019833 ~ 34041157 (+)
LOC110519140 LOC106584034 coding upstream 96446 33926874 ~ 33954721 (+)
coq3 LOC106605038 coding upstream 121982 33909781 ~ 33926457 (+)
pnisr pnisr coding upstream 141345 33898874 ~ 33907094 (+)
usp45 LOC106583983 coding upstream 154124 33846246 ~ 33894315 (+)
mms22l mms22l coding downstream 185491 34257353 ~ 34288713 (+)
LOC110519256 LOC106584073 coding downstream 275267 34347129 ~ 34351764 (+)
LOC110519270 LOC106584080 coding downstream 284222 34356084 ~ 34359512 (+)
cnih4 cnih4 coding downstream 329843 34401705 ~ 34413494 (+)
LOC110519336 LOC106584151 coding downstream 386641 34458503 ~ 34471595 (+)
G248841 NA non-coding upstream 13168 34034883 ~ 34035271 (+)
G248828 NA non-coding upstream 43514 34001848 ~ 34004925 (+)
G248824 NA non-coding upstream 60055 33981317 ~ 33988384 (+)
G248810 NA non-coding upstream 90817 33955558 ~ 33957622 (+)
G249237 NA non-coding downstream 217495 34289357 ~ 34289560 (+)
G249239 NA non-coding downstream 219672 34291534 ~ 34292747 (+)
G249242 LOC106584066 non-coding downstream 225341 34297203 ~ 34297439 (+)
G249246 NA non-coding downstream 231728 34303590 ~ 34304009 (+)
G249249 NA non-coding downstream 234928 34306790 ~ 34307034 (+)
G248795 NA other upstream 35382 34006158 ~ 34013057 (+)
G248794 NA other upstream 70604 33974476 ~ 33977835 (+)
G248750 LOC106583978 other upstream 213164 33828220 ~ 33835275 (+)
G248134 NA other upstream 624336 33423789 ~ 33424103 (+)
LOC110518733 LOC106583759 other upstream 1272652 32771075 ~ 32777409 (+)
G249245 NA other downstream 230710 34302572 ~ 34302907 (+)
G249323 NA other downstream 348028 34419890 ~ 34420612 (+)
rab42b rab42 other downstream 1081840 35153546 ~ 35173463 (+)
LOC110519579 gmeb1 other downstream 1147970 35203647 ~ 35221874 (+)
G251773 NA other downstream 2439712 36511574 ~ 36579307 (+)

Expression


Co-expression Network