G249274 (lyplal1)


Basic Information

Item Value
gene id G249274
gene name lyplal1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34501654 ~ 34506269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU284384
CAGAGTCTTTGTTGAGAAAGCTGGACAGAGCAAAGACTCCTGCTACTTCAGGGTGATAACGGCACGCCAGGTGGAGGGCCATAGCTCCGCCCATAGAAAAACCCCCTTTGGACgaggaacaagacaaaacagaaCATCATTGTACTGGGTTCCATTAGGTGTCTTTGTACAGGTATTCACTGAAAATGTGTATCGAATATTGTATCCAAAGTGCTTTTCCCagggaataaaaaataaaaccaaAACCAAATCCAACTGTGCATACTGGCAATAATATAAGATAGGaacataataataaatatattcaTTTATTATTATGTATGAGTAACAGTAGTTTAAGCCATCCTGGCAGTTTAAGCGGTCCGAAGTGGAAAATACTCTGCCTTTGACtgagaaagaaaataaaaaaacattaaaaatgaAACAGACTCCATAGTTCCACATCATCAGCTTTTTCGCTCCTCAGGAGTCGGCATCCGTTCACGAGCCCATCCTTAATCTCACACATCTGGGTACATCTGGGCACACGGTGTACATCTGGGAAAGTGTGAAAGTACCCATCATCCTGTCAGAGGGGGAAGGGAAGAATGGAGATATGGGGGGAGTTCACACGCTTTGCCCAACGAATAAAACATTTGTCCATGAGattctctgtttctttctttacTTCACCGGCTATACTCCTTGAACcaaaaaaaggtgttatctagaacctaaaacggttctttgtctgtccccataggattACCCTTTGTAGAAGCCTTTTTGGTACTATGTAGAGCCCTtttgggttctacctggaaccaaaaagggttctcctatggggacagctgaagaacccttttttctaagagtacaTACTTTGAGACTGTCTTTCTGGtatactctctgtctttctggtaTACTCTCAGTCTCTCATTCCAAACCACGATAACAAACCTCAATCATACATTCACATTATAATGTCTCCTTCTTTCGTATACCCCTCCGCTGTGCTGTTTGGTACAGTGCTGCTGtgtgttttcagtgtgtgtgtgtgagcctatATGTGTGAAATCATGACTGTGGCGATAGCTTCTCTTTTCTGAGATTCCCCAACGGATCCGTGCTTTTTTAAAGAGTGAAAAACATGAACACACAAGCCTGCGGCGGCGGCTTGTACTTGAAAAAGTTTTTTCCATGGAAAGTTCTGCCGCTTGTCAGTCCGTCAGCCCTGCAAGTGGACTCCGGGTACAGACCACTCCCGTTTCTCCAGTATGCCGACTGATTCCAATGAGTATTTATAGTTAATGACAAAATGTTATGATTTAGGAAGATAATATTTCTCCCAGGAACATGTGTTTTTTGAATCACTTTCTTGAGTGGAGTTCAGGGGCTTTTCTGGCGTTCCACACTGGGCCTTTCACACAAACGCTCAGCTCTTTTTTCCCCCTTCTACTCACAACTATTTccgtatatttatatatttcaggGCTTGTAGGTTAACCCTTTTCCCAATGTTCCCATCGGTTTCCCCTTTCATGGATGCTATCATTTGTTCTCTTACAGAGACATAAAACTTTCGATGGCCCCCCCACATATTTCCTGTGGGAACTCTTACCTAGGTTCTAAAATAGTGTTTATGGCGCTTGATCCGAGCAATTTTATGTCATTGTCATTTACACGCGAACCTGATAACCAAACTATTTGGGAAAAAGGATTTGCTGAACCCAATAATCCCTCCAGAAATACTTTACGGTTCATAATTGGCAGCGAATAAAAGGGTAAAGAAACCTGATAACTTGCATTCTTCATTTTATATCATGACAGAGGGAGTTGAGAACACCaaggccaagagagagagagagtgatgtgtgtagagagagaaagagcaagatcAAGCAAATGGGCAAGTGGATGGGTGCATAATACACATTCAGGAGGGAGTCATGGAGTTAGGAAGTCATGAGGAAGGTAACGAGTGAAGGAGAGACCATACAGCCAAATCTGACATACGGtcagaaagagacagggaaataAAACAAACAGCTCTAGTAGCAGCAGAATtagcgtgtatgtgtgtgagacagtACCTATGATCATCCTGTGTTTTGGTACTCCTGCCCTGATCTCCTCCTGTATAACCGCTCCCAAGGAGTTGGCCATGGCGTCTATAGACTCCAAGTGCTCCAGGCAGTCGTGTGAGATCTTGTAGCGGTCAAACCACACATTGGACAGAGCCCCCCGCATGGGTGTGTATGGCCTGAGGGGTCAActGGCTGGAGCTGTGGGATATACCACTCTGATGTGGGGGAAAGCCAGGTCTGGTACCGAAACCTCTTTGACCCATGCTCGCACTCCCCGTCCAGTGTCTCCTGCATGGCAGAAGTGAACAGTTAGCCAATATAACTGACTCACCAGTCACGAGGCAGAACCTTGGTTTCACC

Function

symbol description
lyplal1 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLAL1 (lysophospholipase like 1).

NR:

description
lysophospholipase-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284384 True 2426 lncRNA 0.44 2 34501654 34506269

Neighbor

gene id symbol gene type direction distance location
LOC110519336 LOC106584151 coding upstream 30059 34458503 ~ 34471595 (+)
cnih4 cnih4 coding upstream 88160 34401705 ~ 34413494 (+)
LOC110519270 LOC106584080 coding upstream 142142 34356084 ~ 34359512 (+)
LOC110519256 LOC106584073 coding upstream 149890 34347129 ~ 34351764 (+)
mms22l mms22l coding upstream 212941 34257353 ~ 34288713 (+)
LOC118964383 NA coding downstream 78082 34584351 ~ 34584491 (+)
LOC118944510 NA coding downstream 159327 34665596 ~ 34666854 (+)
LOC110504041 LOC106605016 coding downstream 165617 34671886 ~ 34707455 (+)
LOC110519409 scmh1 coding downstream 484754 34991023 ~ 35038369 (+)
ctps1b LOC106584221 coding downstream 613437 35119706 ~ 35153002 (+)
G249368 NA non-coding upstream 4901 34496531 ~ 34496753 (+)
G249367 NA non-coding upstream 5416 34495939 ~ 34496238 (+)
G249365 NA non-coding upstream 8115 34493293 ~ 34493539 (+)
G249364 NA non-coding upstream 8380 34492356 ~ 34493274 (+)
G249354 NA non-coding upstream 44720 34456715 ~ 34456934 (+)
G249380 NA non-coding downstream 17423 34523692 ~ 34523982 (+)
G249382 NA non-coding downstream 19250 34525519 ~ 34525962 (+)
G249383 NA non-coding downstream 20193 34526462 ~ 34526698 (+)
G249385 NA non-coding downstream 21109 34527378 ~ 34527635 (+)
G249398 NA non-coding downstream 35121 34541390 ~ 34541620 (+)
G249323 NA other upstream 81042 34419890 ~ 34420612 (+)
G249245 NA other upstream 198747 34302572 ~ 34302907 (+)
G248795 NA other upstream 488597 34006158 ~ 34013057 (+)
G248794 NA other upstream 523819 33974476 ~ 33977835 (+)
G248750 LOC106583978 other upstream 666379 33828220 ~ 33835275 (+)
rab42b rab42 other downstream 647433 35153546 ~ 35173463 (+)
LOC110519579 gmeb1 other downstream 713563 35203647 ~ 35221874 (+)
G251773 NA other downstream 2005305 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 2117341 36623610 ~ 36627542 (+)
G253299 NA other downstream 3220679 37726948 ~ 37727338 (+)

Expression


Co-expression Network