G249681


Basic Information

Item Value
gene id G249681
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34665611 ~ 34671903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU284817
gcaagagaaaatagagagaaagtAGCCGCAGTGACGAATTTGCCCTAATAAAATGGGTTTACTGACTGCAAAAGTTAAACATTGACCAGAGATGAAGCTGTTGCCAGTAATTTTCCTGCTGGCATTAACCTCAGCTACCTCTGCTTTGGACAATGGTTTGACCCATGGGATGGATGTCTTGGGAGCGTTTTTGCTGTAATATCGATTGAGAATGATCCCAAGAACTGCATCAGGTACATAATGGTAGACATGTTTATGTGCAGTTTTACAGAGTGACTCTGAAGTCACTCCTATTGTAGAGCTACTAACCTCATCCCTAGGCTAATTGCAACCGCATATCAGGCAACTTCCCTGTATACAGATTAAGATTAGTTTTGGACTAATAAACACTTTCAATCTAGAATCTCTTTTGAACATAATTTTTCGTCTaggaccaggtttaatctgtttcCGATAAACTGGCCAATAGAGTATAACTCGACAGAT
>TU284816
AATATGATCCATgcctttcgaccttcgtctctcccgagcccgtacaggagttgcagcgatgagacaagatagttaTTTACTAACAATTGgttaccacgaaattggggagaaaaaagggggtaaactttttttaaattaaaaaatatgATCCATGCATCAAATCTGAGCGGTGCTTTCAGTTTCTCTTTGCTGGGCAATacaatttgttgtttgttttgcagAGTTTTTCTGCGACCTAAATATTAACAACTTGGACAAACCTTACAGGTGCTTTGCATATCACTATTTCTCCTCAGAGATGAAGCTGTTGCCAGTAATTTTCCTGCTGGCATTAACCTCAGCTACCTCTGCTTTGGACAATGGTTTGACCCATGGGATGGATGTCTTGGGAGCGTTTTTGCTGTAATATCGATTGAGAATGATCCCAAGAACTGCATCAGCGAGAATCTCTTCAGAGATATGGCAGACAGACTGGCTgaagatgGGTGGAAAGAGA

Function

NR:

description
alpha-N-acetylgalactosaminidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284817 False 486 lncRNA 0.40 2 34665611 34666670
TU284816 True 496 lncRNA 0.42 3 34665978 34671903

Neighbor

gene id symbol gene type direction distance location
LOC118964383 NA coding upstream 81120 34584351 ~ 34584491 (+)
LOC110519336 LOC106584151 coding upstream 194016 34458503 ~ 34471595 (+)
cnih4 cnih4 coding upstream 252117 34401705 ~ 34413494 (+)
LOC110519270 LOC106584080 coding upstream 306099 34356084 ~ 34359512 (+)
LOC110519256 LOC106584073 coding upstream 313847 34347129 ~ 34351764 (+)
LOC110519409 scmh1 coding downstream 319120 34991023 ~ 35038369 (+)
ctps1b LOC106584221 coding downstream 447803 35119706 ~ 35153002 (+)
rab42b rab42 coding downstream 481643 35153546 ~ 35173463 (+)
LOC110519579 gmeb1 coding downstream 531744 35203647 ~ 35221874 (+)
ptprub ptpru coding downstream 586192 35258095 ~ 35611096 (+)
G249668 NA non-coding upstream 12921 34652462 ~ 34652690 (+)
G249657 NA non-coding upstream 22654 34642741 ~ 34642957 (+)
G249643 NA non-coding upstream 32465 34632947 ~ 34633146 (+)
G249638 NA non-coding upstream 35252 34630091 ~ 34630359 (+)
G249389 NA non-coding upstream 35751 34628444 ~ 34629860 (+)
LOC110504041 LOC106605016 non-coding downstream 19 34671886 ~ 34707455 (+)
G249749 NA non-coding downstream 35793 34707696 ~ 34707932 (+)
G249758 NA non-coding downstream 42912 34714815 ~ 34715088 (+)
G249778 NA non-coding downstream 57921 34729824 ~ 34730595 (+)
G249953 NA non-coding downstream 209032 34880935 ~ 34881266 (+)
G249323 NA other upstream 244999 34419890 ~ 34420612 (+)
G249245 NA other upstream 362704 34302572 ~ 34302907 (+)
G248795 NA other upstream 652554 34006158 ~ 34013057 (+)
G248794 NA other upstream 687776 33974476 ~ 33977835 (+)
G248750 LOC106583978 other upstream 830336 33828220 ~ 33835275 (+)
G251773 NA other downstream 1839671 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 1951707 36623610 ~ 36627542 (+)
G253299 NA other downstream 3055045 37726948 ~ 37727338 (+)

Expression


Co-expression Network