Gene
RNA
| Item | Value |
|---|---|
| gene id | G250833 |
| gene name | ptpru |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 35481017 ~ 35481293 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ptpru | Enables beta-catenin binding activity and protein tyrosine phosphatase activity. Involved in several processes, including negative regulation of canonical Wnt signaling pathway; positive regulation of cell-cell adhesion mediated by cadherin; and protein localization to cell surface. Located in cell-cell junction. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU286042 | True | 277 | lncRNA | 0.61 | 1 | 35481017 | 35481293 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:dkey-34d22.1 | LOC106584244 | coding | downstream | 278074 | 35175483 ~ 35202943 (-) |
| taf12 | taf12 | coding | downstream | 305753 | 35169845 ~ 35175264 (-) |
| LOC118944512 | NA | coding | downstream | 390624 | 35089126 ~ 35090393 (-) |
| cited4b | LOC106584212 | coding | downstream | 428736 | 35049466 ~ 35052281 (-) |
| vegf | vegf | coding | downstream | 649789 | 34814879 ~ 34831228 (-) |
| LOC110519653 | LOC106584320 | coding | upstream | 621550 | 36102843 ~ 36109194 (-) |
| stmn1b | LOC106584327 | coding | upstream | 630894 | 36112187 ~ 36117544 (-) |
| LOC110519907 | oprd1 | coding | upstream | 955088 | 36436381 ~ 36437754 (-) |
| LOC110504056 | NA | coding | upstream | 1005582 | 36486875 ~ 36505339 (-) |
| tent5ba | fam46b | coding | upstream | 1062877 | 36544170 ~ 36568553 (-) |
| G250771 | NA | non-coding | downstream | 94384 | 35385653 ~ 35386633 (-) |
| G250770 | NA | non-coding | downstream | 95546 | 35385205 ~ 35385471 (-) |
| G250767 | NA | non-coding | downstream | 98246 | 35382498 ~ 35382771 (-) |
| G250766 | NA | non-coding | downstream | 98606 | 35382185 ~ 35382411 (-) |
| G250752 | NA | non-coding | downstream | 116116 | 35357516 ~ 35364901 (-) |
| G250855 | NA | non-coding | upstream | 32654 | 35513947 ~ 35514151 (-) |
| G250868 | NA | non-coding | upstream | 49807 | 35531100 ~ 35531422 (-) |
| G250879 | NA | non-coding | upstream | 65093 | 35546386 ~ 35546619 (-) |
| G250884 | NA | non-coding | upstream | 72124 | 35553417 ~ 35553715 (-) |
| G250892 | NA | non-coding | upstream | 82187 | 35563480 ~ 35563842 (-) |
| G249990 | NA | other | downstream | 584721 | 34895958 ~ 34896296 (-) |
| G249978 | NA | other | downstream | 591063 | 34889506 ~ 34889954 (-) |
| G249485 | LOC106584080 | other | downstream | 1121566 | 34357275 ~ 34359451 (-) |
| G248239 | LOC106605043 | other | downstream | 2061310 | 33419429 ~ 33419707 (-) |
| LOC110518371 | LOC106583543 | other | downstream | 3899815 | 31562384 ~ 31631107 (-) |
| G251462 | LOC106584332 | other | upstream | 658819 | 36140112 ~ 36144572 (-) |
| G251681 | NA | other | upstream | 876190 | 36357325 ~ 36357971 (-) |
| gpatch3 | gpatch3 | other | upstream | 1250552 | 36731832 ~ 36754332 (-) |
| LOC110519955 | LOC106586057 | other | upstream | 3917968 | 39399261 ~ 39508811 (-) |
| G255911 | NA | other | upstream | 4163278 | 39644571 ~ 39645743 (-) |
