Gene
RNA
| Item | Value |
|---|---|
| gene id | G250911 |
| gene name | ptpru |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 35590963 ~ 35591268 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ptpru | Enables beta-catenin binding activity and protein tyrosine phosphatase activity. Involved in several processes, including negative regulation of canonical Wnt signaling pathway; positive regulation of cell-cell adhesion mediated by cadherin; and protein localization to cell surface. Located in cell-cell junction. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU286120 | True | 306 | lncRNA | 0.63 | 1 | 35590963 | 35591268 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:dkey-34d22.1 | LOC106584244 | coding | downstream | 388020 | 35175483 ~ 35202943 (-) |
| taf12 | taf12 | coding | downstream | 415699 | 35169845 ~ 35175264 (-) |
| LOC118944512 | NA | coding | downstream | 500570 | 35089126 ~ 35090393 (-) |
| cited4b | LOC106584212 | coding | downstream | 538682 | 35049466 ~ 35052281 (-) |
| vegf | vegf | coding | downstream | 759735 | 34814879 ~ 34831228 (-) |
| LOC110519653 | LOC106584320 | coding | upstream | 511575 | 36102843 ~ 36109194 (-) |
| stmn1b | LOC106584327 | coding | upstream | 520919 | 36112187 ~ 36117544 (-) |
| LOC110519907 | oprd1 | coding | upstream | 845113 | 36436381 ~ 36437754 (-) |
| LOC110504056 | NA | coding | upstream | 895607 | 36486875 ~ 36505339 (-) |
| tent5ba | fam46b | coding | upstream | 952902 | 36544170 ~ 36568553 (-) |
| G250906 | NA | non-coding | downstream | 5457 | 35585260 ~ 35585506 (-) |
| G250902 | NA | non-coding | downstream | 10107 | 35580614 ~ 35580856 (-) |
| G250896 | NA | non-coding | downstream | 20997 | 35569749 ~ 35569966 (-) |
| G250894 | NA | non-coding | downstream | 24795 | 35565905 ~ 35566168 (-) |
| G250892 | NA | non-coding | downstream | 27121 | 35563480 ~ 35563842 (-) |
| G250964 | NA | non-coding | upstream | 78240 | 35669508 ~ 35669887 (-) |
| G250969 | NA | non-coding | upstream | 81006 | 35672274 ~ 35676936 (-) |
| G251042 | NA | non-coding | upstream | 131921 | 35723189 ~ 35724202 (-) |
| G251044 | NA | non-coding | upstream | 136547 | 35727815 ~ 35742651 (-) |
| G251048 | NA | non-coding | upstream | 153671 | 35744939 ~ 35802618 (-) |
| G249990 | NA | other | downstream | 694667 | 34895958 ~ 34896296 (-) |
| G249978 | NA | other | downstream | 701009 | 34889506 ~ 34889954 (-) |
| G249485 | LOC106584080 | other | downstream | 1231512 | 34357275 ~ 34359451 (-) |
| G248239 | LOC106605043 | other | downstream | 2171256 | 33419429 ~ 33419707 (-) |
| LOC110518371 | LOC106583543 | other | downstream | 4009761 | 31562384 ~ 31631107 (-) |
| G251462 | LOC106584332 | other | upstream | 548844 | 36140112 ~ 36144572 (-) |
| G251681 | NA | other | upstream | 766215 | 36357325 ~ 36357971 (-) |
| gpatch3 | gpatch3 | other | upstream | 1140577 | 36731832 ~ 36754332 (-) |
| LOC110519955 | LOC106586057 | other | upstream | 3807993 | 39399261 ~ 39508811 (-) |
| G255911 | NA | other | upstream | 4053303 | 39644571 ~ 39645743 (-) |
