G250978


Basic Information

Item Value
gene id G250978
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35681140 ~ 35681368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU286195
GTACGTTTCGCTCCAGAATTCCTTGATAGTCTTGATTTCATTTTGCCCTGCACAGATTCAAGGCACCCTGTGCCAGgcgcagcaaagcagccccaaaacataaccgggcctcctccatgtttcactgtaggtatggtgttcttttctTTGAAAGGTTCATTTTTTGTCTGTGAACATAGAGCTGACGTGACTTGCCAAAAAGCTCCAGTTTGCCTCATCTGTCCAAAGG

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU286195 True 229 lncRNA 0.47 1 35681140 35681368

Neighbor

gene id symbol gene type direction distance location
ptprub ptpru coding upstream 70044 35258095 ~ 35611096 (+)
LOC110519579 gmeb1 coding upstream 459266 35203647 ~ 35221874 (+)
rab42b rab42 coding upstream 510876 35153546 ~ 35173463 (+)
ctps1b LOC106584221 coding upstream 528138 35119706 ~ 35153002 (+)
LOC110519409 scmh1 coding upstream 642771 34991023 ~ 35038369 (+)
serinc2l LOC106584332 coding downstream 443959 36125327 ~ 36144587 (+)
LOC110519702 LOC106584341 coding downstream 490825 36172193 ~ 36262289 (+)
LOC110519762 LOC106584688 coding downstream 612456 36293824 ~ 36301569 (+)
phactr4b LOC106584362 coding downstream 635945 36317313 ~ 36368316 (+)
rcc1 rcc1 coding downstream 700102 36381470 ~ 36387216 (+)
G250973 NA non-coding upstream 2322 35678547 ~ 35678818 (+)
G250972 NA non-coding upstream 2949 35677992 ~ 35678191 (+)
G250965 NA non-coding upstream 9081 35671456 ~ 35672059 (+)
G250630 NA non-coding upstream 91261 35589672 ~ 35589879 (+)
G250629 NA non-coding upstream 91473 35589426 ~ 35589667 (+)
G250979 NA non-coding downstream 281 35681649 ~ 35681951 (+)
G250984 NA non-coding downstream 3405 35684773 ~ 35685051 (+)
G251017 NA non-coding downstream 42049 35723417 ~ 35733272 (+)
G250997 NA non-coding downstream 65856 35747224 ~ 35802618 (+)
G250999 NA non-coding downstream 79905 35761273 ~ 35765863 (+)
G249323 NA other upstream 1260528 34419890 ~ 34420612 (+)
G249245 NA other upstream 1378233 34302572 ~ 34302907 (+)
G248795 NA other upstream 1668083 34006158 ~ 34013057 (+)
G251773 NA other downstream 830206 36511574 ~ 36579307 (+)
G251845 zdhhc18 other downstream 942242 36623610 ~ 36627542 (+)
G253299 NA other downstream 2045580 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 2410954 38092322 ~ 38092734 (+)
G254204 NA other downstream 2759798 38441166 ~ 38441734 (+)

Expression


Co-expression Network