G251048


Basic Information

Item Value
gene id G251048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35744939 ~ 35802618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU286272
tgtgttgatttatagcttcctgtgccaaccggaagtgccataattggtgtctcaggggctgtttcgaagggttaaaaaagtcagatctgtccaaaacttcatatatgtgattaggcaacccccatgaactgtaaatcagtcatttttcccaaaaaaaatcaaaggaaaaaaaaatcgcactaaaacacaacttggatggagggacgtattggggtgcgtagagacagacagtggctgcaatagttagctttgttcgagctaaaaaagaacggttggacctagagttccgaaactttagaaacctgttctagacctccggtcgatggtgcgtggcgagttacgtggctctagacggttctcggaccgagaaacagcctcgtacatttgcattaacttcaattcatttttgcatcacgaaaatgacgacatttagaaatgtcccagagtcgcaagactaggtgcattgcgaacgtctcggcccatatagacagaccccaacgtttctgtccgatagctcattcaaggaccccgtagcaagtcatggaaaatagtggattttcagcaccaattagggtttttctcggacaccaaatgacctatcgagccgaaacttgggattcggggtcgcctcagctaggccaacacataacataagaaatggacccgcagctagaacgtaactacgtgttttatggtttttttatggtttgaaccgaaggcgttgtgaattttgggccagctctgaagtatgtaatagttggctactaaacgagttggaaaaagtgggtttggtgtcagtttgtatcagtttggtggtcagaatgatatctaattgactgatgga
>TU286271
tgtgttgatttatagcttcctgtgccaaccggaagtgccataattggtgtctcaggggctgtttcgaagggttaaaaaagtcagatctgtccaaaacttcatatatgtgattaggcaacccccatgaactgtaaatcagtcatttttcccaaaaaaaatcaaaggaaaaaaaaatcgcactaaaacacaacttggatggagggacgtattggggtgcgtagagacagacagtggctgcaatagttagctttgttcgagctaaaaaagaacggttggacctagagttccgaaactttagaaacctgttctagacctccggtcgatggtgcgtggcgagttacgtggctctagacggttctcggaccgagaaacagcctcgtacatttgcattaacttcaattcatttttgcatcacgaaaatgacgacatttagaaatgtcccagagtcgcaagactaggtgcattgcgaacgtctcggcccatatagacagaccccaacgtttctgtccgatagctcattcaaggaccccgtagcaagtcatggaaaatagtggattttcagcaccaattagggtttttctcggacaccaaatgacctatcgagccgaaacttgggattcggggtcgcctcagctaggccaacacataacataagaaatggacccgcagctagaacgtaactacgtgttttatggtttttttatggtttgaaccgaaggcgttgtgaattttgggccagctctgaagtatgtaatagttggctactaaacgagttggaaaaagtgggtttggtgtcagtttgtatcagtttggtggtcagaatgatatctaattgactgatgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286272 False 844 lncRNA 0.44 2 35744939 35802618
TU286271 True 844 lncRNA 0.44 2 35746915 35802618

Neighbor

gene id symbol gene type direction distance location
si:dkey-34d22.1 LOC106584244 coding downstream 541996 35175483 ~ 35202943 (-)
taf12 taf12 coding downstream 569675 35169845 ~ 35175264 (-)
LOC118944512 NA coding downstream 654546 35089126 ~ 35090393 (-)
cited4b LOC106584212 coding downstream 692658 35049466 ~ 35052281 (-)
vegf vegf coding downstream 913711 34814879 ~ 34831228 (-)
LOC110519653 LOC106584320 coding upstream 300225 36102843 ~ 36109194 (-)
stmn1b LOC106584327 coding upstream 309569 36112187 ~ 36117544 (-)
LOC110519907 oprd1 coding upstream 633763 36436381 ~ 36437754 (-)
LOC110504056 NA coding upstream 684257 36486875 ~ 36505339 (-)
tent5ba fam46b coding upstream 741552 36544170 ~ 36568553 (-)
G251044 NA non-coding downstream 2288 35727815 ~ 35742651 (-)
G251042 NA non-coding downstream 20737 35723189 ~ 35724202 (-)
G250969 NA non-coding downstream 68003 35672274 ~ 35676936 (-)
G250964 NA non-coding downstream 75052 35669508 ~ 35669887 (-)
G250911 ptpru non-coding downstream 153671 35590963 ~ 35591268 (-)
G251057 NA non-coding upstream 14020 35816638 ~ 35817284 (-)
G251059 NA non-coding upstream 16882 35819500 ~ 35819713 (-)
G251068 NA non-coding upstream 21114 35823732 ~ 35877946 (-)
G251070 NA non-coding upstream 39291 35841909 ~ 35844275 (-)
G251073 NA non-coding upstream 80103 35882721 ~ 35883100 (-)
G249990 NA other downstream 848643 34895958 ~ 34896296 (-)
G249978 NA other downstream 854985 34889506 ~ 34889954 (-)
G249485 LOC106584080 other downstream 1385488 34357275 ~ 34359451 (-)
G248239 LOC106605043 other downstream 2325232 33419429 ~ 33419707 (-)
LOC110518371 LOC106583543 other downstream 4163737 31562384 ~ 31631107 (-)
G251462 LOC106584332 other upstream 337494 36140112 ~ 36144572 (-)
G251681 NA other upstream 554865 36357325 ~ 36357971 (-)
gpatch3 gpatch3 other upstream 929227 36731832 ~ 36754332 (-)
LOC110519955 LOC106586057 other upstream 3596643 39399261 ~ 39508811 (-)
G255911 NA other upstream 3841953 39644571 ~ 39645743 (-)

Expression


Co-expression Network