G251600


Basic Information

Item Value
gene id G251600
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36261189 ~ 36262637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU286861
TGGTGCAATTTTTATTGGttcagagaaaaaaaaatgtcctgTGTGAAAATATTTTGGGCACTTGTTCCATATCCAATCTTAAAAGAGAACTTCCTCTCCATCTCAAGTCTTTTGAGAACATTATGAAAAAGACAGACACATGACTAAATAAAAATGGCATgtttttttcctccaaaaatgTCAAGTAAAAAAACTTAAAGAATAACTTACATAGTTTAACAAAATAATAAATATGGAGCACTCTTCTCTGTACAGAGACATAACATTGACTAtctttttataaaaaatatgacTTCAGTGCATTTTCTTTGCAAAGCGCTCACTGTTCCTTCAATATACCACCTCATATTCCATATTTTAGAATACCCTGACATCAATGCAATggccttaaagggatagtttggtGTTTTGGCAATTAATTattatgtctctgcatccagtatgaaggaaggtaGAGGTGCTgtagttttgtgagccaatgctaactagcttaGTGCAAAGACTGGAAGTCTTCGGGTacagctagttagcattggctcacgaaaCTACTTCTAAccccaaactatccctttaaggatACAAACAATCAATCATCACGCCACACAGGAACCCCCTTCCTGGAAACACAGAGTGTAAATCAAAACTTCACAGCCTTTTTTCTTTGTCGTCATCTCAAGACAAACACAGAAAGAAAAGGCACAAGTAACTACAGTTTGGGTAATAGTGGACAAAGAGACAAAACAAATAAATGTGAATTTATTGTTCATTAACGATTTT
>TU286872
tgaccggaccaaggtgcagagtggtaagcgtacattattttattttaaaagtcgccaacaaaaacaataaacaacaaaacgaacgtgaaacTCTGTAAGGCTATacatgccactaacaaagacaacaacccacaaatgagaaaaggaaaaaaggctgcctaagtatgattcccaatcagagacaacgatagacagctgtccctgattgagaatcatacccagccaaaaacaaagaaccagaaagcatagactttcccactcgagtcacaccctgactaaacaaacatagagaataaaacgATCAGGACTTGACACTCTACGATCAGGACTTgacactcagtactggtaccccgtgtatataaccaagttatcattactcattatgtatttattccttgtgttataatTTGATTCTATTATTTTtatctacattgttgggaagggcccttaagtaagtatttcactgttagtttacacctgttgttttcgaaGCAAGTGACAAATAACAATTTATTGAATTTTGTTGATATTAACTCGTTGTTATTTTGTGGAATTCAAACAGAAGCATTCTATATGTATTAATCAATCAGTATTGTGGTTGACCTATTAAAAAAAttatgacattttttaaaaacaagaaaacaaaACAAGTAAAATAACCTCACAGAAGTCTGGTGCAATTTTTATTGGttcagagaaaaaaaaatgtcctgTGTGAAAATATTTTGGGCACTTGTTCCATATCCAATCTTAAAAGAGAACTTCCTCTCCATCTCAAGTCTTTTGAGAACATTATGAAAAAGACAGACACATGACTAAATAAAAATGGCATgtttttttcctccaaaaatgTCAAGTAAAAAAACTTAAAGAATAACTTACATAGTTTAACAAAATAATAAATATGGAGCACTCTTCTCTGTACAGAGACATAACATTGACTAtctttttataaaaaatatgacTTCAGTGCATTTTCTTTGCAAAGCGCTCACTGTTCCTTCAATATACCACCTCATATTCCATATTTTAGAATACCCTGACATCAATGCAATggccttaaagggatagtttggtGTTTTGGCAATTAATTattatgtctctgcatccagtatgaaggaaggtaGAGGTGCTgtagttttgtgagccaatgctaactagcttaGTGCAAAGACTGGAAGTCTTCGGGTacagctagttagcattggctcacgaaaCTACTTCTAAccccaaactatccctttaaggatACAAACAATCAATCATCACGCCACACAGGAACCCCCTTCCTGGAAACACAGAGTGTAAATCAAAACTTCACAGCCTTTTTTCTTTGTCGTCATCTCAAGACAAACACAGAAAGAAAAGGCACAAGTAACTACAGTTTGGGTAATAGTGGACAAAGAGACAAAACAAATAAATGTGAATTTATTGTTCATTAACGATTTT
>TU286858
TGGTGCAATTTTTATTGGttcagagaaaaaaaaatgtcctgTGTGAAAATATTTTGGGCACTTGTTCCATATCCAATCTTAAAAGAGAACTTCCTCTCCATCTCAAGTCTTTTGAGAACATTATGAAAAAGACAGACACATGACTAAATAAAAATGGCATgtttttttcctccaaaaatgTCAAGTAAAAAAACTTAAAGAATAACTTACATAGTTTAACAAAATAATAAATATGGAGCACTCTTCTCTGTACAGAGACATAACATTGACTAtctttttataaaaaatatgacTTCAGTGCATTTTCTTTGCAAAGCGCTCACTGTTCCTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286861 False 777 lncRNA 0.35 1 36261189 36261965
TU286872 False 1449 lncRNA 0.35 1 36261189 36262637
TU286858 True 334 lncRNA 0.31 1 36261632 36261965

Neighbor

gene id symbol gene type direction distance location
stmn1b LOC106584327 coding downstream 143645 36112187 ~ 36117544 (-)
LOC110519653 LOC106584320 coding downstream 152000 36102843 ~ 36109194 (-)
si:dkey-34d22.1 LOC106584244 coding downstream 1058246 35175483 ~ 35202943 (-)
taf12 taf12 coding downstream 1085925 35169845 ~ 35175264 (-)
LOC118944512 NA coding downstream 1170796 35089126 ~ 35090393 (-)
LOC110519907 oprd1 coding upstream 173744 36436381 ~ 36437754 (-)
LOC110504056 NA coding upstream 224238 36486875 ~ 36505339 (-)
tent5ba fam46b coding upstream 281533 36544170 ~ 36568553 (-)
zdhhc18a zdhhc18 coding upstream 349178 36611815 ~ 36629130 (-)
LOC110519930 LOC106584694 coding upstream 373692 36636329 ~ 36643205 (-)
G251563 NA non-coding downstream 49447 36211503 ~ 36211742 (-)
G251562 NA non-coding downstream 49943 36210907 ~ 36211246 (-)
G251558 NA non-coding downstream 56270 36204706 ~ 36204919 (-)
G251556 NA non-coding downstream 57856 36203038 ~ 36203333 (-)
G251535 NA non-coding downstream 91833 36169125 ~ 36169356 (-)
G251617 NA non-coding upstream 15188 36277825 ~ 36288400 (-)
G251648 NA non-coding upstream 53759 36316396 ~ 36316599 (-)
G251652 NA non-coding upstream 64443 36327080 ~ 36327299 (-)
G251655 NA non-coding upstream 67238 36329875 ~ 36330083 (-)
G251661 NA non-coding upstream 73779 36336416 ~ 36336718 (-)
G251462 LOC106584332 other downstream 116617 36140112 ~ 36144572 (-)
G249990 NA other downstream 1364893 34895958 ~ 34896296 (-)
G249978 NA other downstream 1371235 34889506 ~ 34889954 (-)
G249485 LOC106584080 other downstream 1901738 34357275 ~ 34359451 (-)
G248239 LOC106605043 other downstream 2841482 33419429 ~ 33419707 (-)
G251681 NA other upstream 94846 36357325 ~ 36357971 (-)
gpatch3 gpatch3 other upstream 469208 36731832 ~ 36754332 (-)
LOC110519955 LOC106586057 other upstream 3136624 39399261 ~ 39508811 (-)
G255911 NA other upstream 3381934 39644571 ~ 39645743 (-)
G256016 LOC106581772 other upstream 3556011 39818648 ~ 39818980 (-)

Expression


Co-expression Network