G252136


Basic Information

Item Value
gene id G252136
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36604263 ~ 36605654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU287483
ttggaaaaagtatgtgaacccctaggctaatgattCTCCAAACACTAATTAgagtcaggagtcaactaacctggagtccaatcaatgagacgagatgaGACGTTGGTTAGTGCTGCCTTGTCCtataaaaaaacactcacaaaatttgagtttgctattcacaagaatcaTTGCCTGAtatgaaccatgcctcgaacaaaagagatctcagaagacctaagattaagaattgttgacttgcataaagctggaaagggttacaaaattatctctaaaagccttgatcatcagtccacagtaagacaaattgtctttcagcactgttgctactctccctaggagtggccgtcctgcaaagatgactgcaagagcagcATGCGAGTGACAGcaaaagacttacagaaatctctggaacatgctaacatctctgacgagtctacgatatgtaaaacactaaacaagaatggtgttcgtAGGaagacaccacagaagaagccgaTGCTGTCcccaaaaaacattgctgcacaccTGGGGAACACACACTACTATGTGTGGAGAataaaaggcacagcacaccaacatcaaaacctcatgcCAACTGTAATTTATTGTGgagagagcatcatggtttgaggctgctttgctgcctcatggCTTGGACAGCTTGctaacattttgcaggagaatgttaggctatctatccgccaattgaagctcaacagaagttgagtGATTCAACAGGACAGCAactcaaaacacagaagtaaatcaacaacagaagaaaatacgccttctggagtggccaagGCAgaatcctgacctcaacccgatttgagatgctgtggcatgatctcaagagagcagttcacaccaggcatcccaagaatattgctgaactgaaacagttttgtaaagaggaatggtccaaaattcctcctgactgctatgcaggtctgatccgcaactacagaaaacgtttggttgaggttattgctgccaaaggagggtcaaccagttattaaatccaaggtttCACATACTTGTTctaccctgcactgtgaatgtttacaccatgtgttcaataaagacgtgaaaatgtataattgtttgtgtgttattagtttaagcagattGTGTTAGTCTATTGtcacctagatgaagatcagatcaaattttatgaccaatttatgcagaaatccaggtatttccaaagggttcacatactttttcttgcaactgtgtgtgtgtatgtaagtatatactgtacagttgaagtcggaagtttaatacacttaggttggaatcattaaagcTCGTTTGTCaaccaccacaaatttcttgttaacaaactatagttttggcaatcggttaggacatctacgttgtgcatga

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU287483 True 1392 lncRNA 0.41 1 36604263 36605654

Neighbor

gene id symbol gene type direction distance location
tent5ba fam46b coding downstream 35710 36544170 ~ 36568553 (-)
LOC110504056 NA coding downstream 98924 36486875 ~ 36505339 (-)
LOC110519907 oprd1 coding downstream 166509 36436381 ~ 36437754 (-)
stmn1b LOC106584327 coding downstream 486719 36112187 ~ 36117544 (-)
LOC110519653 LOC106584320 coding downstream 495074 36102843 ~ 36109194 (-)
zdhhc18a zdhhc18 coding upstream 6161 36611815 ~ 36629130 (-)
LOC110519930 LOC106584694 coding upstream 30675 36636329 ~ 36643205 (-)
LOC110519931 pigv coding upstream 53570 36659224 ~ 36664245 (-)
LOC110519933 NA coding upstream 59075 36664729 ~ 36686126 (-)
LOC110519934 gpn2 coding upstream 89381 36695035 ~ 36710909 (-)
G252260 NA non-coding downstream 12184 36591640 ~ 36592079 (-)
G252255 NA non-coding downstream 18791 36585238 ~ 36585472 (-)
G252251 NA non-coding downstream 20606 36583441 ~ 36583657 (-)
G252248 NA non-coding downstream 22615 36581391 ~ 36581648 (-)
G252135 yo84 non-coding downstream 203523 36399833 ~ 36400740 (-)
G252237 NA non-coding upstream 53022 36658676 ~ 36659052 (-)
G252284 NA non-coding upstream 139386 36745040 ~ 36782278 (-)
G252299 NA non-coding upstream 161759 36767413 ~ 36821166 (-)
LOC110504063 serpind1 non-coding upstream 286879 36882314 ~ 36906191 (-)
G251681 NA other downstream 246292 36357325 ~ 36357971 (-)
G251462 LOC106584332 other downstream 459691 36140112 ~ 36144572 (-)
G249990 NA other downstream 1707967 34895958 ~ 34896296 (-)
G249978 NA other downstream 1714309 34889506 ~ 34889954 (-)
G249485 LOC106584080 other downstream 2244812 34357275 ~ 34359451 (-)
gpatch3 gpatch3 other upstream 126191 36731832 ~ 36754332 (-)
LOC110519955 LOC106586057 other upstream 2793607 39399261 ~ 39508811 (-)
G255911 NA other upstream 3038917 39644571 ~ 39645743 (-)
G256016 LOC106581772 other upstream 3212994 39818648 ~ 39818980 (-)
G256616 NA other upstream 3716852 40322506 ~ 40322898 (-)

Expression


Co-expression Network