G252008


Basic Information

Item Value
gene id G252008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36888190 ~ 36906601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU287345
taaaaaaaaaacagttttttccataaacaagctctaaatcatgtttgatgcactctggatgtccattttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacTTTTTTACATAAAAAAGCTGTAAATCatatttgatgcactctggatgtccatgtgttgctgtgctgtctatttgagattaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaaatgtttttccataaacaagctctaaatcatgttcgatgcactctggatgtccatgttttgctgtgctgtctatttgagatgaaattaacattttggacagttttcagcaagttgcaacattgaaatacagaaaaaaacatttatttccataaacaagctctaaataatgtttgatgcactctggatgtccattttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaacaAACTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccaatttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgaaacattgaaatacagattttttttttccataaacaagctctaaatcatgtttgatgcactctggatgtccattttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacgttattccataaacaagctctaaatcatgtttgatgcactctggatgtccatgtTTTGCtttgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgtttttatgtgctgtctatttgagatgagatgaac
>TU287347
ATCAGGAACCCACCATTTGAGAAACACTGACCTAAGGTATTTATCATGCGCAAATAACCATGGTCAATATCAACATGTTTAGCCTTTTTTTGGTTGGATACCTAAGACAGTTTCCCCATACACCAAAGAACATCCAAACGGGTTATTAGACTTGAATTAACACTTTATTAAAACCCTttcattgtggacagttttcagcaagttgcaacattgaaatacagaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgtTTTGCTGTGCtttctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgttttgctgtgctgtctatttgagatgaaattaacattgtggacagttttcagcaagttgaaacattgaaatacagattttatttttttccataaacaagctctaaatcatgtttgatgcactctggatgtccattttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaaatgtttttccataaacaagctctaaatcatgtttgatgcactctggatgtccaatttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaacaACTTTTttacataaacaagctctaaatcatgtttgatgcactttggatGTTAAATTTTTGCTGTGCtttctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaaacatttatttccataaacaagctctaaatcatgtttgatgcactctggatgtccatttttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaactgtttttccataaacaagctctaaatcatgtttgatgcactctggatgtccaattcttgctgtgctgtctatttgagattaaatgaacattgtggacagttttcagcaagttgcaacattgaaatgcagaaataagcatttttcaaaaaacaagctctaaatcatgtttgttacACTACTGGATAAACTTTTttttgttatgtttattcgagatgttatgaaaacactgtagactgttttcagcaagttgcaacattgaaaggcagaaataagcactattccataaaaaagctctaaatcatgtttgatgcactctgggtaaaaaaaaacatttgttatgtttattcgagttgatattgaaaacactgttttcagcaagttgcaacattgaaatgcagaaataagcactaccataaacaagctctaaatcatgtttgatttac
>TU287348
ATCAGGAACCCACCATTTGAGAAACACTGACCTAAGGTATTTATCATGCGCAAATAACCATGGTCAATATCAACATGTTTAGCCTTTTTTTGGTTGGATACCTAAGACAGTTTCCCCATACACCAAAGAACATCCAAACGGGTTATTAGACTTGAATTAACACTTTATTAAAACCCTttcattgtggacagttttcagcaagttgcaacattgaaatacagaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgtTTTGCTGTGCtttctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgttttgctgtgctgtctatttgagatgaaattaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaaatgtttttccataaacaagctctaaatcatgttcgatgcactctggatgtccatgttttgctgtgctgtctatttgagatgaaattaacattttggacagttttcagcaagttgcaacattgaaatacagaaaaaaacatttatttccataaacaagctctaaataatgtttgatgcactctggatgtccattttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaacaAACTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccaatttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgaaacattgaaatacagattttttttttccataaacaagctctaaatcatgtttgatgcactctggatgtccattttttgctgtgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacgttattccataaacaagctctaaatcatgtttgatgcactctggatgtccatgtTTTGCtttgctgtctatttgagatgaaatgaacattgtggacagttttcagcaagttgcaacattgaaatacagaaaaaacTTTTttacataaacaagctctaaatcatgtttgatgcactctggatgtccatgtttttatgtgctgtctatttgagatgagatgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU287345 False 1048 lncRNA 0.33 3 36888190 36894313
TU287347 False 1485 lncRNA 0.33 5 36892648 36906601
TU287348 True 1261 lncRNA 0.34 3 36892648 36894313

Neighbor

gene id symbol gene type direction distance location
LOC110519932 LOC106591969 coding upstream 228637 36657467 ~ 36659553 (+)
rcc1 rcc1 coding upstream 500974 36381470 ~ 36387216 (+)
phactr4b LOC106584362 coding upstream 519874 36317313 ~ 36368316 (+)
LOC110519762 LOC106584688 coding upstream 586621 36293824 ~ 36301569 (+)
LOC110519702 LOC106584341 coding upstream 626223 36172193 ~ 36262289 (+)
LOC110519936 LOC106586041 coding downstream 512505 37419106 ~ 37424336 (+)
LOC110519939 LOC106604981 coding downstream 578982 37428004 ~ 37489579 (+)
si:ch211-184m13.4 LOC106586045 coding downstream 782187 37688788 ~ 37691898 (+)
LOC110519942 LOC106586050 coding downstream 842094 37748695 ~ 37756709 (+)
LOC110519944 LOC106586047 coding downstream 1327742 38234343 ~ 38250022 (+)
G251999 NA non-coding upstream 10183 36877753 ~ 36878007 (+)
G251938 NA non-coding upstream 115388 36767412 ~ 36772802 (+)
G251860 NA non-coding upstream 121491 36695040 ~ 36766699 (+)
G251914 NA non-coding upstream 138933 36734526 ~ 36749257 (+)
G251881 NA non-coding upstream 206312 36664757 ~ 36681878 (+)
G252083 NA non-coding downstream 108153 37014754 ~ 37015310 (+)
G252101 NA non-coding downstream 148158 37054759 ~ 37065840 (+)
G252495 NA non-coding downstream 191097 37097698 ~ 37098146 (+)
G252554 NA non-coding downstream 254397 37160998 ~ 37161528 (+)
G252725 NA non-coding downstream 371347 37277948 ~ 37278162 (+)
G251845 zdhhc18 other upstream 260648 36623610 ~ 36627542 (+)
G251773 NA other upstream 363017 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 1666818 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 1714727 35153546 ~ 35173463 (+)
G249323 NA other upstream 2467578 34419890 ~ 34420612 (+)
G253299 NA other downstream 820347 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 1185721 38092322 ~ 38092734 (+)
G254204 NA other downstream 1534565 38441166 ~ 38441734 (+)
G254445 NA other downstream 1693886 38600487 ~ 38600866 (+)
G254816 NA other downstream 1936909 38843510 ~ 38844556 (+)

Expression


Co-expression Network