G252725


Basic Information

Item Value
gene id G252725
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37277948 ~ 37278162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU288117
ttaccgtgttaaatgtggtggtttgcgctttcagcaCAAATACTATCcatggtttttggtttggataggTTTAATTGTCATAGTGGGAAGAACATCCTCTACGCACTTCCTGATGAACAAAGTCACTGAGTCAGTGTATATGTCATGTTGTTGTCAGAGGCAACACAGAACATTTCCCAGTctgcatgatcaaaacaatcatGAAGCatagattc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106600457

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU288117 True 215 lncRNA 0.40 1 37277948 37278162

Neighbor

gene id symbol gene type direction distance location
LOC110519932 LOC106591969 coding upstream 618395 36657467 ~ 36659553 (+)
rcc1 rcc1 coding upstream 890732 36381470 ~ 36387216 (+)
phactr4b LOC106584362 coding upstream 909632 36317313 ~ 36368316 (+)
LOC110519762 LOC106584688 coding upstream 976379 36293824 ~ 36301569 (+)
LOC110519702 LOC106584341 coding upstream 1015981 36172193 ~ 36262289 (+)
LOC110519936 LOC106586041 coding downstream 140944 37419106 ~ 37424336 (+)
LOC110519939 LOC106604981 coding downstream 207421 37428004 ~ 37489579 (+)
si:ch211-184m13.4 LOC106586045 coding downstream 410626 37688788 ~ 37691898 (+)
LOC110519942 LOC106586050 coding downstream 470533 37748695 ~ 37756709 (+)
LOC110519944 LOC106586047 coding downstream 956181 38234343 ~ 38250022 (+)
G252554 NA non-coding upstream 116420 37160998 ~ 37161528 (+)
G252495 NA non-coding upstream 179802 37097698 ~ 37098146 (+)
G252101 NA non-coding upstream 212108 37054759 ~ 37065840 (+)
G252083 NA non-coding upstream 262638 37014754 ~ 37015310 (+)
G252008 NA non-coding upstream 371347 36888190 ~ 36906601 (+)
G252727 NA non-coding downstream 531 37278693 ~ 37278910 (+)
G252751 NA non-coding downstream 15653 37293815 ~ 37294015 (+)
G252818 NA non-coding downstream 80334 37358496 ~ 37359033 (+)
G252822 NA non-coding downstream 85535 37363697 ~ 37363921 (+)
G252824 NA non-coding downstream 87143 37365305 ~ 37365537 (+)
G251845 zdhhc18 other upstream 650406 36623610 ~ 36627542 (+)
G251773 NA other upstream 752775 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2056576 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2104485 35153546 ~ 35173463 (+)
G249323 NA other upstream 2857336 34419890 ~ 34420612 (+)
G253299 NA other downstream 448786 37726948 ~ 37727338 (+)
G253834 LOC100136012 other downstream 814160 38092322 ~ 38092734 (+)
G254204 NA other downstream 1163004 38441166 ~ 38441734 (+)
G254445 NA other downstream 1322325 38600487 ~ 38600866 (+)
G254816 NA other downstream 1565348 38843510 ~ 38844556 (+)

Expression


Co-expression Network