G253305


Basic Information

Item Value
gene id G253305
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37729005 ~ 37752270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU288728
tcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgAGTACCGGTTCCGATCGACATTAATATAAATCTCTTATAAATCGATCTGTGGACATGTAGATCAAAATGGCTTGCATCGAGCGGTAGCCTTGATTCTCACGGACATAGGAGTATGTCTCGTTTGCCTGTGTGAAGCaggatgtgaaatctgacaccacttgaagctggcatgtccctcctaccatttcATTCTCTCTTCCGGCTATCCATCATTTCCTAGCTGAACCCTACATCACAGCCGTAGGAGAGTTGCTGTAGCATATTCAGAGCTCAATTTATAGGCAGTAATTTTAAATAATTCATCGATTTGAAACACAAATCACTTTCTGTTTGTCATAGACGGACAACATTAATATGAGATGAAAGATGAGTTCCTAACGAGTTCAAGAAGCCAAGTTGGAGCTCTGTGAGACGTCCACAGCGATGGGGGCAGACGTTTTAATTAAGAGAGACCtttagaaaatatgcacattttctttAATACTAAGTATAAGAATATGTATTTTACATTTATAAGGAAAGTGAAATCTTATAGTTAGTCGTTTTATAAATTAATTATTCCATATTTAGAAAAAATATAAGTCGTTTCAAGCCTTAttcatacatcatttaaaataCTTCATATTTTCATTATATTTGTACTGTTTATTTGAGTCAACACTGTTGAGTTTGTGTCCTCAACAGTGAATATACCTCACCAATTTATAAAAAAatttaccagaaaggtgagatttaAACCTTTCTCTGAGTATGCAggattactagttattgtttatggccctctcatgataaataattacttttggggATTACGTAGATTACATTTCTGATTACATTTAGTAACATTTAAGAGGTTTTTAAAGCTTATTCAATACAGTTATTATCAAGTGTTACAGATATGACTTATGTAGAAAGCAGCTATCTCCTTCAGACCTTTGAGGTCAGTATCCAAACACATTGAGAAAGAATAGTTTTACTTCCTTACTGAAAGCAGAATTTCCCATTATAGATACCCATCTGATCCGTTCATGCAAAATCATACTTAGAGTAACAAGTTCCATAGCTGTGACTTCAAATCATGCTCTAAATAGGGGACAGGCCACAAGAAGTGCCAAGCAGTAGGATGTCATTTTCACATTACTACAAGCCAAATCCTTCTCACTAGCTAAGTTTCCAACCAATTGGTGACACATTTTTATGCAAATATTCAAAAATCTGTATTAAGAAAATATGCAAAtgttcccaccagtggtgtttccaccaaacagacttgacatagtgcacacaaaatgtatgttttcatgtaccgaataaaaacaaacagttttgtcacaaaaactgttgtaaAAAAGCAAATGTGCCTAATCTGGTCTTGGCATGTGCGCTCTAGACAACAGCTTGAAGATACAGTGTGGGTAAACTGTGTGgttaggctagtctacatgattatggataagagccagaataattttatttgtcaaacggcagtcaagcatcgatcatcatttcaccagaataagaccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU288728 True 1652 lncRNA 0.36 2 37729005 37752270

Neighbor

gene id symbol gene type direction distance location
si:ch211-184m13.4 LOC106586045 coding upstream 37107 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 239435 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 304669 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1069452 36657467 ~ 36659553 (+)
rcc1 rcc1 coding upstream 1341789 36381470 ~ 36387216 (+)
LOC110519944 LOC106586047 coding downstream 482073 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 883676 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1419627 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1641371 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 1855899 39608169 ~ 39621078 (+)
G253022 NA non-coding upstream 90328 37638313 ~ 37638677 (+)
G252894 NA non-coding upstream 330586 37398220 ~ 37398419 (+)
G252891 NA non-coding upstream 333284 37395515 ~ 37395721 (+)
G252866 NA non-coding upstream 344200 37384600 ~ 37384805 (+)
G253316 NA non-coding downstream 8516 37760786 ~ 37761394 (+)
G253392 NA non-coding downstream 50338 37802608 ~ 37802882 (+)
G253393 NA non-coding downstream 50664 37802934 ~ 37803493 (+)
G253412 NA non-coding downstream 62487 37814757 ~ 37816542 (+)
G253418 LOC106586049 non-coding downstream 72144 37824414 ~ 37841104 (+)
G253299 NA other upstream 1667 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 1101463 36623610 ~ 36627542 (+)
G251773 NA other upstream 1203832 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2507633 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2555542 35153546 ~ 35173463 (+)
G253834 LOC100136012 other downstream 340052 38092322 ~ 38092734 (+)
G254204 NA other downstream 688896 38441166 ~ 38441734 (+)
G254445 NA other downstream 848217 38600487 ~ 38600866 (+)
G254816 NA other downstream 1091240 38843510 ~ 38844556 (+)
LOC110519960 LOC106586058 other downstream 1906789 39658753 ~ 39668297 (+)

Expression


Co-expression Network