G253393


Basic Information

Item Value
gene id G253393
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 37802934 ~ 37803493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU288817
ttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacactccgagggccctcacctcctccctgtaggccgtctcgtcattgttggtaatcaagcctaccactgttgtgtcatccgcaaacttgatgattgagttggaggcgtgcgtggccacgcagtcgtgggtgaacagggagtacaggagagggctcagaacgcacccttgtggggccccagtgttgaggatcaactcTTTGTGTGTCGCATTGCTCCCTCTGAAAGAAGAGAAAAGCTTGCAATGTTTCAGACCTTGAATTTTTTACAATACTGTGTTGAATTATGCAGCGATCGATCAGTCAACTATTAATCTCTGTGGCTGTGTTACAgccatgctttaaaaaaaatgggaCCAGGCCAAGCAATGCTGTGTCAACACATTCCTCTAAGAATTGCTTACAAGAGAAATGTGTCTCTCAATGTCGATTAAATTTTTCTCCTTACAAGTTTAGAGTGGTGTACCTGTTACAGATCAACGGTCACAGTTAATGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU288817 True 560 lncRNA 0.46 1 37802934 37803493

Neighbor

gene id symbol gene type direction distance location
LOC110519942 LOC106586050 coding upstream 47482 37748695 ~ 37756709 (+)
si:ch211-184m13.4 LOC106586045 coding upstream 111036 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 313364 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 378598 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1143381 36657467 ~ 36659553 (+)
LOC110519944 LOC106586047 coding downstream 430850 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 832453 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1368404 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1590148 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 1804676 39608169 ~ 39621078 (+)
G253392 NA non-coding upstream 52 37802608 ~ 37802882 (+)
G253316 NA non-coding upstream 41540 37760786 ~ 37761394 (+)
G253305 NA non-coding upstream 50664 37729005 ~ 37752270 (+)
G253313 NA non-coding upstream 58502 37743965 ~ 37744432 (+)
G253412 NA non-coding downstream 11264 37814757 ~ 37816542 (+)
G253418 LOC106586049 non-coding downstream 20921 37824414 ~ 37841104 (+)
G253496 NA non-coding downstream 129334 37932827 ~ 37933822 (+)
G253788 NA non-coding downstream 260821 38064314 ~ 38064525 (+)
G253789 NA non-coding downstream 261132 38064625 ~ 38064836 (+)
G253299 NA other upstream 75596 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 1175392 36623610 ~ 36627542 (+)
G251773 NA other upstream 1277761 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2581562 35203647 ~ 35221874 (+)
rab42b rab42 other upstream 2629471 35153546 ~ 35173463 (+)
G253834 LOC100136012 other downstream 288829 38092322 ~ 38092734 (+)
G254204 NA other downstream 637673 38441166 ~ 38441734 (+)
G254445 NA other downstream 796994 38600487 ~ 38600866 (+)
G254816 NA other downstream 1040017 38843510 ~ 38844556 (+)
LOC110519960 LOC106586058 other downstream 1855566 39658753 ~ 39668297 (+)

Expression


Co-expression Network