G253940


Basic Information

Item Value
gene id G253940
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38161470 ~ 38161705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU289376
cataaaagcctgattggtggagtgctgcagagatggttagccttctggaaggttctcccatctccacagcagAACtccagaggtctgccagagtgaccatcgggttcttggtcacctccatgaccaaggcccttctcctccgattgttcagtttggacgggcggccagctctaggaagagtcttggtggttccaaacttcttccattcttccatttaagaatgatggaggccactg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU289376 True 236 lncRNA 0.52 1 38161470 38161705

Neighbor

gene id symbol gene type direction distance location
LOC110519942 LOC106586050 coding upstream 406018 37748695 ~ 37756709 (+)
si:ch211-184m13.4 LOC106586045 coding upstream 469572 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 671900 37428004 ~ 37489579 (+)
LOC110519936 LOC106586041 coding upstream 737134 37419106 ~ 37424336 (+)
LOC110519932 LOC106591969 coding upstream 1501917 36657467 ~ 36659553 (+)
LOC110519944 LOC106586047 coding downstream 72638 38234343 ~ 38250022 (+)
LOC110519946 NA coding downstream 474241 38635946 ~ 38760490 (+)
LOC110519950 LOC106586053 coding downstream 1010192 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 1231936 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 1446464 39608169 ~ 39621078 (+)
G253925 NA non-coding upstream 12378 38148873 ~ 38149092 (+)
G253905 NA non-coding upstream 23686 38137585 ~ 38137784 (+)
G253882 NA non-coding upstream 33402 38127865 ~ 38128068 (+)
G253860 NA non-coding upstream 49161 38111084 ~ 38112309 (+)
G253835 NA non-coding upstream 68255 38092771 ~ 38093215 (+)
G253954 NA non-coding downstream 5709 38167414 ~ 38167629 (+)
G253995 NA non-coding downstream 30451 38192156 ~ 38197192 (+)
G253999 NA non-coding downstream 37458 38199163 ~ 38199370 (+)
G254000 NA non-coding downstream 37826 38199531 ~ 38199857 (+)
G254003 NA non-coding downstream 40045 38201750 ~ 38201958 (+)
G253834 LOC100136012 other upstream 68736 38092322 ~ 38092734 (+)
G253299 NA other upstream 434132 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 1533928 36623610 ~ 36627542 (+)
G251773 NA other upstream 1636297 36511574 ~ 36579307 (+)
LOC110519579 gmeb1 other upstream 2940098 35203647 ~ 35221874 (+)
G254204 NA other downstream 279461 38441166 ~ 38441734 (+)
G254445 NA other downstream 438782 38600487 ~ 38600866 (+)
G254816 NA other downstream 681805 38843510 ~ 38844556 (+)
LOC110519960 LOC106586058 other downstream 1497354 39658753 ~ 39668297 (+)
LOC110519969 LOC106586020 other downstream 2278364 40440040 ~ 40452542 (+)

Expression


Co-expression Network