G254570


Basic Information

Item Value
gene id G254570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 38760708 ~ 38764081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU290036
ccaggaagtgggtattttcaattgaatgcctatagagTATCTAATGGGTTTTAGaacccagattgcagttcatatggcttccaccagatgtcaacagtctgaagacattgtttcaggcttgttttctgaaaaatgaagaagaatgagacctttctCTCAGTGGACTGTATAATCAAGCTGGTTTTGCGCATGACCGAGTGTgccccttcgttgtttttcctttctattgaatacgctattgtccggttgaaatattatcgattatttagacaattgacaacctgaggattaattttaaacatcgtttgacatgtttcgacgaactttaccggtactattaggaagtatatgtctgcatgttttgagccagtggatttgaGCCAAATTTGAGCCagcctttgagccagtggattactgaacaaaacgctcCAACAAAACTGGGTTTTTGGGATAAAAAGagggactttatggaacaaaacaaatgTTTATTGTGTacctgggactcttgtgactgcaaccatatgaagatcttcaaaggtacgTGATTAATTTACATACCTGAAGGTCACTTTTCGGCATTTGCTGTATGATCGATGAGAATCTCCATATTGGAAATGTACGGTCGCTTACTAGACATCCGCAAATGTTTCAAAAATTTGCCGACGGCGGCGGGCCGTGCACCGGGGCCAGATCTTCCGGGAAGTCATCGAACGAAGTCTCTCTGACATTTGGTTTCCGTTTTATAACAATgttggtcatttttccgctgtcccggtAAATTCCACCAGATGGCGAATGGAATCTTatggcaaatgtacaaaacatcaccaattACGACATGGCCATTTCTCCTAAATGGAAAAGACTTCAAAGACGAAACTCGGTAAGCATAGGTTTTGAACTAATGGAAACAAGATGGCGATGAGGCCCAACGATTTTTCAGTTAAGGCCAAAATTTTGGGATttaaggtgaaaaaaaaaatagagCTATAATTTGAAGAGAGCGCTACATGAACGTACGCTGTCAggaaaaagaaccagccatttatctatcgtaatttaagagaaatcgtacaatgtacAATTGGTGTTGTTCAAAGaaatttgttttttttccccaaaaaaagttacagatccagttgtgACGTGTTCAGACGAATCCGTTAAGGTGGGTTTCGGAGATTTCTGTGAATTTCTGTGATTATCTGAaatcacacacactcattcaaccctctgtaaatcagtcagttcttaacataaagactcaAAACCCACAATTATGTAAGAGCCTACCCCAAGAAGGATATGTTTTATCTTTCAGCTTCCAGTGTCATCCAGAAGTGCCTTAAATTGGGGtcataggggctgtttcgaagggttaaaaatgtcagatctttccaaaacttcatatgtgtgattagacAACAATGAACTGtaaaatcagtcatttctcccaacagatgttcTTCTTTCAAAGAAagaactctcacacacacacacacagacacacacacacacacacacacacacacacatgaaataGGGGGCGCCCCTGGTCATTTTGGACTTTTTtcaatacaaaaacaaacaaCTGAGTCCCACTTCTCCCTCATCATCATGACCAATAGACCATCTAGGTTGATTCATGGCTTAACATAGTGCTATATATCATTTGGGCGGTATAAATgccatggttcactgacttttgggttcGGAAACCCATGGTCGTACATGGtaaatggacataacatcctgatttggcactTTCAATACTTTCATATTgtatttggacatttcttatggcatttggcaaTGGTTcattgacttttgacttcctatgatatcatattgcaaatggacaaaacatgatCCTTATGGACAAGTTTAAAAAATCTGACAATAAAATCTGACAAAAGTATGTTCAAAACAGTTGTTATACATGTATAAATGACAAAAACATCAAAAGAATTTCAAAAAACAGTCAACACTTTTTTAGGGGGTGATAAgttcttgaaaaaaaaaataataatcaaaaaTTTGCCTCTTGGGTCTTGACTTgatgtacatttgcaatatgaaatttACTGTGGAGCGCGCTCGCCATCTATTGGATTTTTGCTGTGCGACACTTGGCATTAGCCATATGACATTTGCAATAAGTTTTGAATGATATGCTTGAGTGGTATTGTACATCGTGTATATGTTTCGTAAGGTACCAATAAGTTCCCATTCATCTTTGTCCATTTCAGGAGGGTCTTCacttggttgtaaaatgtttgtatgcttttgtaagcggggcgctgtcctcagataattgcatggtatgcttttgccgtaaagccattttgaaatctgacaattaacaagaagttcatctttaaacctatgtgtaacacttgtattttttatgaatgtttattatgactatttctgtattttgaatttggctctctgcaatttccctggatgttgtcgaggtgggtcgctagcgtaACGCCTGCGCCAGAAATGTTaaaaacaaaggatccaattcgggaaagtcgtatttctGGTCGGAATGCTGGTTAGTTCCCGCCGcactgatatccaaaagttatttccggctatATGTAATAACATAAAAAACGTTCTTGGCTaataggtttcctccagacgtgacgcgtcgcattcaggccaaaaagtttaatcttggtttcatcagacaagaaaatcttgtttctaatggtctgagagtcttgttggcttccgtctggccactctaccataaatggaagacaggcctgattggtggagtactgcagagatggttgtccttctggaaggttcccccacctccacaaaggaactctggagctctgtcagagtgaccattgggtgtcacctccctgaccaaggcctttctccagTTTGGCTGGGGTCGGCCAGCTCCAGGGAAggctcttggtggttccaaacttctcccatttaagaatgatggaggccactgtgttcttggtgaccttcaatgctgcagacatttttttggtacagTTCCCGAGATTTGTGTCTCGTcagaatcctgtctcgaagctctacggacaattccttcgacctcatggcttggtttttgctctgacatgcactattaACTGTGGGACATTCtttagacaggtgtatgcctttcctaatcatgtccaatcagttgaatttaccacaggtggactccaatcaagttgtagaaagatctcaaggatgatcaatggaaaacaggatgcaccagagtctcaaagcaaagggtctgaatacatatgtaagtgTATTTCAGTtaaatttttaaaaaacatttctaaaaacctgtttgttttgtcataatggggtattgggATTTCAGAGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU290036 True 3374 lncRNA 0.40 1 38760708 38764081

Neighbor

gene id symbol gene type direction distance location
LOC110519946 NA coding upstream 218 38635946 ~ 38760490 (+)
LOC110519944 LOC106586047 coding upstream 510686 38234343 ~ 38250022 (+)
LOC110519942 LOC106586050 coding upstream 1005256 37748695 ~ 37756709 (+)
si:ch211-184m13.4 LOC106586045 coding upstream 1068810 37688788 ~ 37691898 (+)
LOC110519939 LOC106604981 coding upstream 1271138 37428004 ~ 37489579 (+)
LOC110519950 LOC106586053 coding downstream 407816 39171897 ~ 39214104 (+)
trnaf-gaa NA coding downstream 629560 39393641 ~ 39393713 (+)
LOC110519956 LOC105026395 coding downstream 844088 39608169 ~ 39621078 (+)
LOC110519960 LOC106586058 coding downstream 894672 39658753 ~ 39668297 (+)
LOC110519963 LOC106586016 coding downstream 942360 39706441 ~ 39709665 (+)
G254589 NA non-coding upstream 136559 38623941 ~ 38624149 (+)
G254583 NA non-coding upstream 141444 38619033 ~ 38619264 (+)
G254562 NA non-coding upstream 147865 38612627 ~ 38612843 (+)
G254447 NA non-coding upstream 158092 38602358 ~ 38602616 (+)
G254343 NA non-coding upstream 294816 38465619 ~ 38465892 (+)
G254735 NA non-coding downstream 256 38764337 ~ 38764657 (+)
G254736 NA non-coding downstream 780 38764861 ~ 38765123 (+)
G254741 NA non-coding downstream 4176 38768257 ~ 38768462 (+)
G254743 NA non-coding downstream 4784 38768865 ~ 38769176 (+)
G254751 NA non-coding downstream 9453 38773534 ~ 38774940 (+)
G254445 NA other upstream 159842 38600487 ~ 38600866 (+)
G254204 NA other upstream 318974 38441166 ~ 38441734 (+)
G253834 LOC100136012 other upstream 667974 38092322 ~ 38092734 (+)
G253299 NA other upstream 1033370 37726948 ~ 37727338 (+)
G251845 zdhhc18 other upstream 2133166 36623610 ~ 36627542 (+)
G254816 NA other downstream 79429 38843510 ~ 38844556 (+)
LOC110519969 LOC106586020 other downstream 1675988 40440040 ~ 40452542 (+)
G261749 NA other downstream 5487988 44252069 ~ 44252551 (+)
G262037 NA other downstream 5756338 44520419 ~ 44525408 (+)

Expression


Co-expression Network