G258000


Basic Information

Item Value
gene id G258000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41379018 ~ 41379405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU293775
cctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctagggacctgagtcctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293775 True 282 lncRNA 0.51 2 41379018 41379405

Neighbor

gene id symbol gene type direction distance location
LOC118944668 NA coding upstream 517838 40858297 ~ 40861180 (+)
dnah7 dnah7 coding upstream 676340 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 926476 40440040 ~ 40452542 (+)
asmtl asmtl coding upstream 1596614 39769763 ~ 39782404 (+)
LOC110519965 LOC106586023 coding upstream 1609592 39745774 ~ 39769426 (+)
LOC110519971 tmeff2 coding downstream 175066 41554471 ~ 41725755 (+)
LOC110519972 sdpr coding downstream 360685 41740090 ~ 41767612 (+)
spegb LOC106586064 coding downstream 407548 41786953 ~ 41915322 (+)
LOC110519974 LOC106586063 coding downstream 562694 41922501 ~ 41965278 (+)
LOC110519975 LOC106586062 coding downstream 607850 41987255 ~ 42160686 (+)
G257901 NA non-coding upstream 108385 41270428 ~ 41270633 (+)
G257624 NA non-coding upstream 126366 41175003 ~ 41252652 (+)
G257482 NA non-coding upstream 398923 40979731 ~ 40980095 (+)
G257435 NA non-coding upstream 432890 40945754 ~ 40946128 (+)
G257303 LOC106594194 non-coding upstream 535179 40843610 ~ 40843839 (+)
G258303 NA non-coding downstream 252534 41631939 ~ 41703505 (+)
G258228 NA non-coding downstream 346377 41725782 ~ 41726046 (+)
G258395 NA non-coding downstream 399294 41778699 ~ 41778904 (+)
G258396 NA non-coding downstream 400770 41780175 ~ 41780484 (+)
G258443 NA non-coding downstream 466041 41845446 ~ 41845660 (+)
LOC110519960 LOC106586058 other upstream 1710930 39658753 ~ 39668297 (+)
G254816 NA other upstream 2534462 38843510 ~ 38844556 (+)
G254445 NA other upstream 2778152 38600487 ~ 38600866 (+)
G254204 NA other upstream 2937284 38441166 ~ 38441734 (+)
G261749 NA other downstream 2872664 44252069 ~ 44252551 (+)
G262037 NA other downstream 3141014 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 4459516 45838921 ~ 45839480 (+)
G263710 NA other downstream 4554714 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 4696079 46075484 ~ 46079425 (+)

Expression


Co-expression Network