G258447


Basic Information

Item Value
gene id G258447
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41850004 ~ 41850231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU294235
GCCATTGACCTCCAGCTTGGAGCTCCTCTCCCCAGTAGCCGGTTGTTTACCCTCTCTCGTCCCGAGCAAGAGGCTATGGAGAGTTACATCCAGGATTCTCTGGCTGCAGGACTTATCAAGCCATCTTCCTCCCCGGTGGGTACTGGGTTTttctttgtgaagaagaaggatgggtcACTGAGGCAATGCATGGACTTCCGTGGGCTGAATAATATCACTGTTAAGAAG

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294235 True 228 lncRNA 0.52 1 41850004 41850231

Neighbor

gene id symbol gene type direction distance location
LOC110519972 sdpr coding upstream 82392 41740090 ~ 41767612 (+)
LOC110519971 tmeff2 coding upstream 124249 41554471 ~ 41725755 (+)
LOC118944668 NA coding upstream 988824 40858297 ~ 40861180 (+)
dnah7 dnah7 coding upstream 1147326 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 1397462 40440040 ~ 40452542 (+)
LOC110519974 LOC106586063 coding downstream 91868 41922501 ~ 41965278 (+)
LOC110519975 LOC106586062 coding downstream 137024 41987255 ~ 42160686 (+)
LOC110519977 csn8 coding downstream 325650 42175881 ~ 42205548 (+)
LOC110519976 LOC100194537 coding downstream 346235 42196466 ~ 42198481 (+)
LOC110519988 LOC106586103 coding downstream 611306 42461537 ~ 42534154 (+)
G258446 LOC106608106 non-coding upstream 241 41849351 ~ 41849763 (+)
G258445 NA non-coding upstream 1013 41848731 ~ 41848991 (+)
G258444 NA non-coding upstream 2632 41847082 ~ 41847372 (+)
G258443 NA non-coding upstream 4344 41845446 ~ 41845660 (+)
G258396 NA non-coding upstream 69520 41780175 ~ 41780484 (+)
G258538 NA non-coding downstream 166509 42016740 ~ 42017023 (+)
G258539 NA non-coding downstream 169021 42019252 ~ 42070212 (+)
G258650 NA non-coding downstream 377435 42227666 ~ 42227968 (+)
G258657 NA non-coding downstream 382874 42233105 ~ 42233311 (+)
LOC110519960 LOC106586058 other upstream 2181916 39658753 ~ 39668297 (+)
G254816 NA other upstream 3005448 38843510 ~ 38844556 (+)
G254445 NA other upstream 3249138 38600487 ~ 38600866 (+)
G254204 NA other upstream 3408270 38441166 ~ 38441734 (+)
G261749 NA other downstream 2401838 44252069 ~ 44252551 (+)
G262037 NA other downstream 2670188 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 3988690 45838921 ~ 45839480 (+)
G263710 NA other downstream 4083888 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 4225253 46075484 ~ 46079425 (+)

Expression


Co-expression Network