G259344


Basic Information

Item Value
gene id G259344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41905291 ~ 41918305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU295205
TGGGTTTAAGATGTATGTTCTTTATTATTATTCGTAGCTATTTCATGCCAGATTCAGAGAGATTCCACAGAACAAAGAAGGTTAAGAGCCGAAtcaagggctctattcaatcatagcggttgttttggcggtgtcagaggtggaactgcattagagctgtcaaatccacaagtggctcctagcattatacctaaagtggacattgccattggctgcacagaGTTGCATTACGAGAAATctcatgcagccttgtttacaactTATAACACTGGAATGTCAGTTGTAATCTATACCTTGATTAGGCTGATCGAAATCCTCATTATTTAATTTAATGTTTTTCAATTTGAGAGTCATTATCtcgacattatctcacatttcttttagactaacatttagtttcaatattcaaattcgatctccagctgtcccatagtaatgaacgtgtcgggagtcgGGACGATACAGCATGCagacagcgtttctcagccagtcgaaatcacaAATCATCTGAGAAAatgtttatggatatatacaaagaaatgtaaattgttaaaaggtcaaatgaaacgaagagcagctagtttgcagtctttccaacttcagtttgaagtgattgtgttagccttgttgttggctagctcctctgaacaacagtgtcctaacGAGAGAGTatattttctatgccaggcaaaatcatgcctcattagctcattgttatggatgtatccagataactgtcactagaaaacagcttaaacaaatgcaaatgcggctaatttgctgttattctggctgcactttttgaggtgactaagttagccgtagttggctagctatcaagcaagggataagaacgttgccagccaggaTGGCAACGGAATATTTAGAACGAATAACTGGGTCGCGTccgtagatacagaacaaaaacacGGAACGACTGGGTCCCGTCTCTGGCAActgaaccgatagaacgaacgaccagccggcttggatAACAACcatagatttgtgtcgggactatatcttgaggaaggatgaaatagtatgaatacaaTCATCGAAATAAGGTTTTTAATGAAAAATCTGAATCATTATTTGAGtatgttggtaacctgttgtataaaagtgataatgcactcaaagccggtgtctggagga
>TU295203
TGGGTTTAAGATGTATGTTCTTTATTATTATTCGTAGCTATTTCATGCCAGATTCAGAGAGATTCCACAGAACAAAGAAGGTTAAGAGCCGAAtcaagggctctattcaatcatagcggttgttttggcggtgtcagaggtggaactgcattagagctgtcaaatccacaagtggctcctagcattatacctaaagtggacattgccattggctgcacagaGTTGCATTACGAGAAATctcatgcagccttgtttacaactTATAACACTGGAATGTCAGTTGTAATCTATACCTTGATTAGGCTGATCGAAATCCTCATTATTTAATTTAATGTTTTTCAATTTGAGAGTCATTATCtcgacattatctcacatttcttttagactaacatttagtttcaatattcaaattcgatctccagctgtcccatagtaatgaacgtgtcgggagtcgGGACGATACAGCATGCagacagcgtttctcagccagtcgaaatcacaAATCATCTGAGAAAatgtttatggatatatacaaagaaatgtaaattgttaaaaggtcaaatgaaacgaagagcagctagtttgcagtctttccaacttcagtttgaagtgattgtgttagccttgttgttggctagctcctctgaacaacagtgtcctaacGAGAGAGTatattttctatgccaggcaaaatcatgcctcattagctcattgttatggatgtatccagataactgtcactagaaaacagcttaaacaaatgcaaatgcggctaatttgctgttattctggctgcactttttgaggtgactaagttagccgtagttggctagctatcaagcaagggataagaacgttgccagccaggaTGGCAACGGAATATTTAGAACGAATAACTGGGTCGCGTccgtagatacagaacaaaaacacGGAACGACTGGGTCCCGTCTCTGGCAActgaaccgatagaacgaacgaccagccggcttggatAACAACcatagatttgtgtcgggactatatcttgaggaaggatgaaatagtatgaatacaaTCATCGAAATAAGGTTTTTAATGAAAAATCTGAATCATTATTTGAGtatgttggtaacctgttgtataaaagtgataatgcactcaaagccggtgtttggaggatatattggcacggtttgccggcCCTTGACTTTGTcttgggcctaacaacacccatgtCAATATATCCTCTAAATACCAGCTTCTAGGGCATTATCACTTATATAGCATACACTTTCTCATGGGTGTGTTTTCGGGACAatgatttgacagctccaatgcAGTTTCACCTCCGACACTGCCAAAACATCAGCTAGGGTGTCGGCTATCACCGCttaacgcttgatctgatttaATCTAGGCCCAAGCTGAATTGCTCAatcaatgaataaataaataaacgcgcacacacacacacacaaagccatcCAGTATCATAATACTCCCCCCCTCCCCCGAATAAAATATTTAATTAAAGCTAATATTGATTCTCAACATACAAAGCAAATGCTTGTGTTTCAATGTGCATTACATGGGACACTGCAATAATTCAAGGTATCTTACTTTGGTACAAAACTATTAACTTTATCATTACCAACCTTGCAAACAGTTCCATTCCAAAATAATTTGCAATTACTTTACTTCTTAACGTACTGGAGGTGTCTTGCACGTTCCTTCTTTGTCTTCATACATCaatattcactctctctctttttaaatGTTAATACGGTCTTCACAATCCATTGAAATGTATTCTTAATCCATTTTGTAGATTTACCCCAAGTACTCCTGTCATCCAAGAAATTGGGCATATCATAATTGTATACAAAACTGCATGATATGACGCACAGGGCAGGCATCAAACTAATATCATACTTGACAATGGTATTCAACTACAAGAATCCTGCTGAAATACTTAATTGTTAACAAACTGCTGatttaaaaactgaaatacaaTGTAAAGTAAAATCAACTTCATGACACTCATTTGCCGCATCACTTCATGACTATACCacaataaatatatattgtatCTATAATATTAAATCTCTTTTGTTAAACCGTTTCGATGTTGGATGATGAAGATATTAAAACAGAATCAAATAACTAAATTCTCAAATGTTTATGAAACGTTCACACTTTCTTCATCTGCATGGATGTGACTGACATGCACCTACACACGTTTATTTTTCAAATATGGCAATAACCCCAAAACAAAGATACATTCTTTCTCCAAGCATCATCCTAATTTAAAAGTGGGAACTTGTATTATCTGTGTACTAATTTACATTCTTACAGTCAAAGAGGCCCTGTTTAACTGTAGATTAAGCCACTCATCACTCCCTCTAACCATTcacattttgcaaatgtaattTGTCAAAATGTTCAATCTGAACTCTAGTAAGGGCACTTGTAAGCTACAGCATGACCCTTCCACATTATACCCTGTGACTCAAGACACCCTCAGCTAATGTGAATCTAAGGTACTGGAGTTCAAGGCAGCCTTTGTATACACAGACTTGGTATACACAAATCCTCTGCAATGTCCATGAATTATGGGAACTATAGGAACATGTAGCCATTGACATAGTAATATATAATGACAAAGACTCAACGGGCCAAATCAGAATGCCTTTAAGAATATTTTCAGGCAGATGGTGTCCTATTCCTTGATTTGGGTTGCATTGATTGGTTGTTCACTGTTCTGGTAGCTCTTGCTGATCTTGCCTCGACCATTTAGCTAACAATTACTTCTCAAtgcatttaTTCCGTCTTGTGTTTTCAAGAACATTCTGATGATCAGAGATAGAAAATGACACTGAGCACTATGGTGTGCATACCGTAGCACCCAAAATCATGGGTTAAAGATGTTATCAGTAGTGTCGCTTTGTTCATAAAAAATTGCTTAGAAGAGACGTAATCTCCACAAATGTCATTATCCTAGGGAAAGATAAAATCACACATGCACTAGATGTTTCGAGAAGATATCTGGTGTACATGGATACAAGAGGATACAAGAGGATCAGATGAAAACTTTTTGAGATTGTTAACATAAAAAAAGAGAGCAGAGGTTTGGAACTTTGAGCTGGCATCCAGTCCTTGAGAAACATGTATCACCCCATGAAATACACAAAGAACCATCGCGGGATTGTCTCATTGCAAGACAAAAAATGTGGGGCTTCCTGTAGGCTTAGTATAGGGACTTTCTGGTGGAGGCAGAGAGGTTAGGTCCTCAATATTCAGAACCAGTGCTGGATTTTGTGATTTTATGTCCATTTGGATGAAAAGGTCAAAGTCACACCTCATCTCACCAAGTTAGGGAGCTCGGTCCTAAGACCTGCCTCGTTTAGATTGCGTACTTCCTCTCAGGCAACAGCTCCTGCCTTCATGCATTTGACATATGAAGCCGTGCTCACTGTGTGACCGGTGTCATGGGCAAAGGGGGTATAGGGCTGGTGGGTGACTGGGTCGAGCTCTGGTATGACCGGAGAAGGACCTTGTGCTTGGTGGCCACCCCCACCCGCAGGCTCTGCTGTTCGTCCAGGTATTCCTTGAGGCGCGTGGTGGTGAAGGTGAGGGTCTGCCGCCGCAGCCGCATCAGGTAGGCATCCTGGAGCCATGAGTTGTTGTAGCAGTCCTTGATGGAAGGACGGGCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU295205 False 1158 lncRNA 0.40 2 41905291 41918305
TU295203 True 3693 lncRNA 0.40 2 41914427 41918305

Neighbor

gene id symbol gene type direction distance location
LOC110519968 LOC106586018 coding downstream 1500256 40396378 ~ 40405035 (-)
LOC118944520 NA coding downstream 1622415 40279614 ~ 40282876 (-)
LOC110519967 shox coding downstream 1780028 40111206 ~ 40125263 (-)
LOC110519961 NA coding downstream 2244712 39646055 ~ 39660579 (-)
LOC110519957 LOC106586009 coding downstream 2261996 39631499 ~ 39643295 (-)
LOC110519979 LOC106586061 coding upstream 325271 42243576 ~ 42291605 (-)
col6a3 LOC106598405 coding upstream 373423 42291728 ~ 42329627 (-)
LOC110519978 LOC106586070 coding upstream 411334 42329639 ~ 42334795 (-)
LOC118936375 LOC106581667 coding upstream 416602 42334907 ~ 42339654 (-)
LOC110519982 LOC106586070 coding upstream 421605 42339910 ~ 42364268 (-)
G259328 NA non-coding downstream 64019 41841005 ~ 41841272 (-)
G259307 NA non-coding downstream 104209 41800586 ~ 41801082 (-)
G259281 NA non-coding downstream 135553 41769253 ~ 41769738 (-)
G259255 NA non-coding downstream 171130 41733754 ~ 41734161 (-)
G259247 NA non-coding downstream 178057 41726998 ~ 41727234 (-)
G259496 NA non-coding upstream 171539 42089844 ~ 42123312 (-)
G259539 NA non-coding upstream 221764 42140069 ~ 42162167 (-)
G259563 LOC100194537 non-coding upstream 278421 42196726 ~ 42198137 (-)
G259595 NA non-coding upstream 309247 42227552 ~ 42227791 (-)
G259600 NA non-coding upstream 315137 42233442 ~ 42233681 (-)
G259259 sdpr other downstream 137703 41763817 ~ 41767588 (-)
G256632 NA other downstream 1569851 40335210 ~ 40335440 (-)
G256616 NA other downstream 1582393 40322506 ~ 40322898 (-)
G256016 LOC106581772 other downstream 2086311 39818648 ~ 39818980 (-)
G255911 NA other downstream 2259548 39644571 ~ 39645743 (-)
G259576 LOC106599288 other upstream 367325 42285630 ~ 42327995 (-)
G259579 LOC106586070 other upstream 371954 42290259 ~ 42319385 (-)
G261580 NA other upstream 2071219 43989524 ~ 44031505 (-)
G262993 NA other upstream 3091867 45010172 ~ 45012249 (-)

Expression


Co-expression Network