G259576 (LOC106599288)


Basic Information

Item Value
gene id G259576
gene name LOC106599288
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42285630 ~ 42327995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU295466
TTTATTTTCTCAGTTCCTCATGACACCTCCAGAAAGGATGTGGTATTCCTTGTGGATGGTTCTGATGGCACAAGGAATGGATTCCCAGCAATGCGTGATTTTGTTCAGAGAGTAGTGGGGAAACTCAATGTGGGAGGAGACAAAGACCGCGTTTCTGTTGTCCAGTACGGTAGAGATCAAGAAGTTCATTTCTATCTGAACACATACACCACAAAGGAGGACATTCTTAACACTGTGAGAAGTCTGAGGCACAGAGGAGGTAGACCCCTTAACACTGGGGCAGCCCTCCAATACGTAAGGGACAACGTCCTTACTGCCTCCTCTGGAAGCAGAAGCCAAGAGGGCGTCCCTCAGATGCTGATACTGCTGAGTGGGGGAAGGTCCAGTGATAATGTTGACATACCAGCTTCTGCCCTGAAAGACAGTGGGGTCTTGATCTTTGGCATTGGAACCAG
>TU295453
TGGCACTAGGAATGGCTTTCCAGCAATGCGTGACTTTGTTCAAAGAGTGGTAGAGAAACTcactgtggaggagaacagagatcGAGTCTCTGTGGTCCAGTATAGCAGAGAATCAGAGGCCCACTTCTATCTGAACACTTACACAACAATGGAAGACGTTGTGAACACCGTAAGAGGCCTGAGGCACAAAGGAGGGAgacccctcaacactggggcagcTCTCCAGTATGTCAGGGACAATGTCTTTACTGCCTCCTCCGGAAGTAGGCGCCTTGAAGGTGTTCCACAGATTCTGATACTGCTGAATGGTGGAAGGTCCTTTGACAATGTAGATACACCAGCGTCTGATCTCAAGGAGCTTGGTGTCTTGGTGTTTGGAATTGGAACAAGGAGCTCTGATAGCAGAGAATTACAGAAAATATCCTATGACCCCAGTTATGCTCTTTCTGTGTCTGAATTTACTGACCTCCCCAACGTCCAACAGCAGCTTCTTTCTGCTATGAGCACTGTCATTGTACAGGTCACAACCATGACACCAACAGTAAAACCAACAATTCTAGTTGAGAGTCAGGCTCCCAGGAGGGATGTCGTGTTCTTGCTGGATGGATCTGATGGCACTAGGAGTGGATTCCCAGCAATGCGGGACTTTGTTCAAAGAGTAGTGGAGACACTCGGTGTGGATGAGAACAAAGATCGCGTGGCTGTGGTCCAGTACAGTAGAGATCCAGCCGCCCAATT
>TU295465
CAGTCACAGGTAAGAACGGATGCGTTATCTAGGACAACTAAAACAACACACATATTTCAGTCTCAGGTTCATGGAAGCAATGTTAACATagtttctgttttgtttctgaaACTCTTAGTGGACCAAAGCATTGCCAGAAAGGATGTAGTGTTCCTGCTGGATGGTTCCGATGGCACTAGGAATGGCTTTCCAGCAATGCGTGACTTTGTTCAAAGAGTGGTAGAGAAACTcactgtggaggagaacagagatcGAGTCTCTGTGGTCCAGTATAGCAGAGAATCAGAGGCCCACTTCTATCTGAACACTTACACATCAAAGGAAGACGTTGTGAACACCGTAAGAGGCCTGAAGCACAAAGGAGGGAgacccctcaacactggggcagcTCTCCAGTATGTCAGGGACAATGTCTTTATTGCCTCCTCTGGAAGTAGGCGACTTGAAGGTGTTCCACAGATTCTGATACTGCTGAATGGTGGAAGGTCCTTTGACAATGTAGATACACCAGCGACTGATCTCAAGGAGCTTGGTGTCTTGGTGTTTGGAATTGGAACAAGGAGCTCTGATAGCAGAGAATTACAGAAAATATCCTACGACCCCAGTTATGCTCTTTCCGTGTCTGAATTTACTGACCTCCCCAACGTCCAACAGCAGCTTCTTTCTGCTATGAGCACTGTCATTGTACAGGTCACAACCATGACACCAACAGTAAAACCAACAATTCTAGTTGAGAGTCAGGCTCCCAGGAGGGATGTCGTGTTCTTGCTGGATGGATCTGATGGCACTAGGAGTGGATTCCCAGCAATGCGGGACTTTGTTCAAAGAGTAGTGGAGACACTCGGTGTGGATGAGAACAAAGATCGCGTGGCTGTGGTCCAGTACAGTAGAGATCCAGCCGCCCAATT
>TU295457
CTGCTGAATGGTGGAAGGTCCTTTGACAATGTAGATACACCAGCGTCTGATCTCAAGGAGCTTGGTGTCTTGGTGTTTGGAATTGGAACAAGGAGCTCTGATAGCAGAGAATTACAGAAAATATCCTATGACCCCAGTTATGCTCTTTCAGTGTCTGAATTTACTGACCTCCCCAACGTCCAACAGCAGCTTCTTTCTGCTATTAGCACTGTCATTGTACAGGTCACAACCATGACACCAACAGTAAAACCAACAATTCTAGTTGAGAGTCAGGCTCCCAAGAGGGATGTTGTGTTCTTGCTGGATGGATCTGATGGCACTAGGAGTGGATTCCCAGCAATGCGGGACTTTGTTCAAAGAGTAGTGGAGACACTCGGTGTGGATGAGAACAAAGATCGCGTGGCTGTGGTCCAGTACAGTAGAGATCCAG
>TU295461
TGCCTCCCGAGGCCTTTCATGTTGGATTTATTTCGTACCTCTGTAGGAATGTTCTCTATGATAGCACTCAGTCCAATGCACACATTGACACTTTCTTTGAATGGTTGTTTGAGATTAGGGAAAGGGATGACTGTCATGTGAAGGAAGCAGCTTTGTCCTGTTTTTCCCTTACCTATGCAtcatttaataaaacattttttttctgaacATTCACATTCTCTAGTTGAGAGTCAGGCTCCCAGGAGGGATGTTGTGTTCTTGCTGGATGGATCTGATGGCACTAGGAGTGGATTCCCAGCAATGCGGGACTTTGTTCAAAGAGTAGTGGAGACACTCGGTGTGGATGAGAACAAAGATCGCGTGGCTGTGGTCCAGTACAGTAGAGATCCAGCCGCCCAATTCTATCTGAACACATACACAACAAAAGGAGAGATTCTCAACACTGTACAAGGTCTGAGACACAAAGGTGGGAGACCTCTCAACACTGGAGCAGCTCTCCAGTACGTGAGAGACAATGTCTTGACTGCCTCCTCCGGAAGTCGACGCACTGAAGGTGTTCCACAGTTACTGATTCTGCTGAGTGGTGGAAGGTCCTTTG
>TU295450
TTCCAGCAGAGAGGTTCAAGGGATTGCCACTGATCCTAGTTTTTCCCAGTCTGTTTCTGAATTCACTGACCTCCCCAGCGTCCAGGAGCAGTTTTTCTCCACACTCATAACTGTACAAGTTGAGGCCACACCCAAAACCCCAACAGTCATAGTGGACCAAAGCATTGCCAGAAAGGATGTAGTATTCCTGCTGGATGGTTCTGATGGTACTAGGAATGGCTTTCCAGCAATGCGTGACTTTGTTCAAAGAGTGGTAGAGAAACTcactgtggaggagaacagagatcGAGTCTCTGTGGTCCAGTATAGCATAGAATCAGAGGCCCACTTCTATCTGAACACTTACACAACAAAGGAAGACGTTGTGAACACCGTAAGAGGCCTGAGGCACAAAGGAGGGAgacccctcaacactggggctgcTCTCCAGTATGTCAGGGACAATGTCTTTACTGCCTCCTCCGGAAGTAGGCGCCTTGAAGGTGTTCCACAGATTCTGATACTGCTGAATGGTGGAAGGTCCTTTGACAATGTAGATACACCAGCGTCTGATCTCAAGGAGCTTGGTGT

Function

NR:

description
PREDICTED: collagen alpha-3(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295466 False 455 TUCP 0.49 2 42285630 42293169
TU295453 False 738 TUCP 0.49 2 42288992 42290036
TU295465 False 908 TUCP 0.47 4 42288992 42327995
TU295457 False 430 lncRNA 0.47 2 42291363 42292100
TU295461 False 598 TUCP 0.46 2 42305328 42327180
TU295450 True 570 TUCP 0.49 2 42322739 42325778

Neighbor

gene id symbol gene type direction distance location
LOC110519968 LOC106586018 coding downstream 1886328 40396378 ~ 40405035 (-)
LOC118944520 NA coding downstream 2008487 40279614 ~ 40282876 (-)
LOC110519967 shox coding downstream 2166100 40111206 ~ 40125263 (-)
LOC110519961 NA coding downstream 2630784 39646055 ~ 39660579 (-)
LOC110519957 LOC106586009 coding downstream 2648068 39631499 ~ 39643295 (-)
LOC110519978 LOC106586070 coding upstream 37539 42329639 ~ 42334795 (-)
LOC118936375 LOC106581667 coding upstream 42807 42334907 ~ 42339654 (-)
LOC110519982 LOC106586070 coding upstream 47810 42339910 ~ 42364268 (-)
LOC110520683 NA coding upstream 163024 42455124 ~ 42457706 (-)
LOC118955837 NA coding upstream 300266 42592366 ~ 42617176 (-)
LOC110519979 LOC106586061 non-coding downstream 8845 42243576 ~ 42291605 (-)
G259614 NA non-coding downstream 21239 42269230 ~ 42270124 (-)
G259600 NA non-coding downstream 57682 42233442 ~ 42233681 (-)
G259595 NA non-coding downstream 63572 42227552 ~ 42227791 (-)
G259563 LOC100194537 non-coding downstream 93226 42196726 ~ 42198137 (-)
col6a3 LOC106598405 non-coding upstream 5746 42291728 ~ 42329627 (-)
G259685 NA non-coding upstream 141101 42433201 ~ 42433418 (-)
G259691 NA non-coding upstream 147180 42439280 ~ 42439506 (-)
G259700 NA non-coding upstream 155187 42447287 ~ 42447514 (-)
G259779 NA non-coding upstream 294184 42586284 ~ 42590360 (-)
G259259 sdpr other downstream 523775 41763817 ~ 41767588 (-)
G256632 NA other downstream 1955923 40335210 ~ 40335440 (-)
G256616 NA other downstream 1968465 40322506 ~ 40322898 (-)
G256016 LOC106581772 other downstream 2472383 39818648 ~ 39818980 (-)
G255911 NA other downstream 2645620 39644571 ~ 39645743 (-)
G261580 NA other upstream 1697424 43989524 ~ 44031505 (-)
G262993 NA other upstream 2718072 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 2807240 45099333 ~ 45104286 (-)
G263274 NA other upstream 3244232 45536332 ~ 45537542 (-)
G259830 NA non-coding upstream 339000 42666995 ~ 42741571 (-)
G265988 NA other upstream 5271223 47599218 ~ 47599815 (-)

Expression


Co-expression Network