G259579 (LOC106586070)


Basic Information

Item Value
gene id G259579
gene name LOC106586070
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42290259 ~ 42319385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU295472
acgctctgtctgtctctgacttcaCTGACCTTCCAAACATCCAGCAGCAACTTCTGTCCTCGGTGGAGTCAGTTGTTATTGACGTTACGCCAGAATCGACAACAGATTTAGGTATGTGTCATCACTGTTAATTGAGAGTCAGGAAGTGTGAGTAAAATGTCAGCTGAGTCTTAGAAACAACGGTATAATTTGACCACAAGCCCCACATTTCAACTGTCTGATTGACATAATCTATTTATTTTCCCAGTTCCTCATGACACCTCCAGAAAGGATGTGGTATTCCTTGTGGATGGTTCTGATGGCACAAGGAATGGATTCCCAGCAATGCGTGATTTTGTTCAGAGAGTAGTGGGGAAACTCAATGTGGGAGGAGACAAAGACCGCGTTTCTGTTGTCCAGTACGGTAGAGATCAAGAAGTTCATTTCTATCTGAACACATACACCACAAAGGAGGACATTCTTAACACTGTGAGAAGTCTGAGGCACAGAGGAGGTAGACCCCTTAACACTGGGGCAGCCCTCCAATACGTAAGGGACAATGTCCTTACTGCCTCCTCTGGAAGCAGAAGCCAAGAGGGCGTCCCTCAGATGCTGATACTGCTGAGTGGGGGAAGGTCCAGTGATAATGTTGACGTACCAGCTTCTGCCCTGAAAGACAGTGGGGTCTTGATCTTTGGCATTGGAACCAGAAATTCCAGCAGAGAGGTTCAAGGGATTGCCACTGATCCTAGTTTTTCCCAGTCTGTTTCTGAATTCACTGACCTCCCCAGCGTCCAGGAGCAG
>TU295473
AGAGTAGTGGGGAAACTCAATGTGGGAGGAGACAAAGACCGCGTTTCTGTTGTCCAGTACGGTAGAGATCAAGAAGTTCATTTCTATCTGAACACATACACCACAAAGGAGGACATTCTTAACACTGTGAGAAGTCTGAGGCACAGAGGTGGTAGACCCCTTAACACTGGGGCAGCCCTCCAATACGTAAGGGACAATGTCCTTACTGCCTCCTCTGGAAGCAGAAGCCAAGAGGGCGTCCCTCAGATGCTGATACTGCTGAGTGGGGGAAGGTCCAGTGATAATGTTGACGTACCAGCTTCTGCCCTGAAAGACAGTGGGGTCTTGATCTTTGGCATTGGAACCAGAAATTCCAGCAGAGAGGTTCAAGGGATTGCCACTGATCCTAGTTTTTCCCAGTCTGTTTCTGAATTCACTGACCTCCCCAGCGTCCAGGAGCAG
>TU295475
AGAGTAGTGGGGAAACTCAATGTGGGAGGAGACAAAGACCGCGTTTCTGTTGTCCAGTACGGTAGAGATCAAGAAGTTCATTTCTATCTGAACACATACACCACAAAGGAGGACATTCTTAACACTGTGAGAAGTCTGAGGCACAGAGGTGGTAGACCCCTTAACACTGGGGCAGCCCTCCAATACGTAAGGGACAATGTCCTTACTGCCTCCTCTGGAAGCAGAAGCCAAGAGGGCGTCCCTCAGATGCTGATACTGCTGAGTGGGGGAAGGTCCAGTGATAATGTTGACGTACCAGCTTCTGCCCTGAAAGACAGTGGGGTCTTGATCTTTGGCATTGGAACCAGAAATTCCAGCAGAGAGGTTCAAGGGATTGCCACTGATCCTAGTTTTTCCCAGTCTGTTTCTGAATTCACTGACCTCCCCAGCGTCCAGGAGCAG
>TU295474
CACATGATCCCAGttacgctctgtctgtctctgacttcaCTGACCTTCCAAACATCCAGCAGCAACTTCTGTCCTCGGTGGAGTCAGTTGTTATTGACGTTACGCCAGAATCGACAACAGATTTAGGTATGTGTCATCACTGTTAATTGGGAGTCAGGAAGTGTTAGTAAAATGTCAGCTGAGTCTTAGAAACAACGGTATAATTTGACCACAAGCCCCACATTTCAACTGTCTGATTGACATAATCTATTTATTTTCTCAGTTCCTCATGACACCTCCAGAAAGGATGTGGTATTCCTTGTGGATGGTTCTGATGGCACAAGGAATGGATTCCCAGCAATGCGTGATTTTGTTCAGAGAGTAGTGGGGAAACTCAATGTGGGAGGAGACAAAGACCGCGTTTCTGTTGTCCAGTACGGTAGAGATCAAGAAGTTCATTTCTATCTGAACACATACACCACAAAGGAGGACATTCTTAACACTGTGAGAAGTCTGAGGCACAGAGGAGGTAGACCCCTTAACACTGGGGCAGCCCTCCAATACGTAAGGGACAATGTCCTTACTGCCTCCTCTGGAAGCAGAAGCCAAGAGGGCGTCCCTCAGATGCTGATACTGCTGAGTGGGGGAAGGTCCAGTGATAATGTTGACATACCAGCTTCTGCCCTGAAAGACAGTGGGGTCTTGATCTTTGGCATTGGAACCAGAAATTCCAGCAGAGAGGTTCAAGGGATTGCCACTGATCCTAGTTTTTCCCAGTCTGTTTCTGAATTCACTGACCTCCCCAGCGTCCAGGGGCAGTTTTTCTCCACACTCATAACTGTACAAGTTGAGGCCACACCCAAAACCCCAACAGTCACAGTGGACCAAAGCATTGCCAGAAAGGATGTAGTATTCCTGCTGGATGGTTCTGATGGCACTAGGAATGGCTTTCCAACAATGCGTGACTTTGTTCAAAGAGTGGTAGAGAAACTcactgtggaggagaacagagatcGAGTCTCTGTGGTCCAGTATAGCAGAGAATCAGAGGCCCACTTCTATCTGAACACTTACACAACAAAGGAAGACGTTGTGAACACCGTA

Function

NR:

description
collagen alpha-3(VI) chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295472 False 783 TUCP 0.47 3 42290259 42319385
TU295473 False 441 lncRNA 0.50 3 42290259 42302509
TU295475 False 441 lncRNA 0.50 3 42290259 42297785
TU295474 True 1083 TUCP 0.47 2 42292227 42295780

Neighbor

gene id symbol gene type direction distance location
LOC110519968 LOC106586018 coding downstream 1885224 40396378 ~ 40405035 (-)
LOC118944520 NA coding downstream 2007383 40279614 ~ 40282876 (-)
LOC110519967 shox coding downstream 2164996 40111206 ~ 40125263 (-)
LOC110519961 NA coding downstream 2629680 39646055 ~ 39660579 (-)
LOC110519957 LOC106586009 coding downstream 2646964 39631499 ~ 39643295 (-)
LOC110519978 LOC106586070 coding upstream 27130 42329639 ~ 42334795 (-)
LOC118936375 LOC106581667 coding upstream 32398 42334907 ~ 42339654 (-)
LOC110519982 LOC106586070 coding upstream 37401 42339910 ~ 42364268 (-)
LOC110520683 NA coding upstream 152615 42455124 ~ 42457706 (-)
LOC118955837 NA coding upstream 289857 42592366 ~ 42617176 (-)
LOC110519979 LOC106586061 non-coding downstream 7741 42243576 ~ 42291605 (-)
G259614 NA non-coding downstream 20135 42269230 ~ 42270124 (-)
G259600 NA non-coding downstream 56578 42233442 ~ 42233681 (-)
G259595 NA non-coding downstream 62468 42227552 ~ 42227791 (-)
G259563 LOC100194537 non-coding downstream 92122 42196726 ~ 42198137 (-)
G259685 NA non-coding upstream 130692 42433201 ~ 42433418 (-)
G259691 NA non-coding upstream 136771 42439280 ~ 42439506 (-)
G259700 NA non-coding upstream 144778 42447287 ~ 42447514 (-)
G259779 NA non-coding upstream 283775 42586284 ~ 42590360 (-)
G259830 NA non-coding upstream 364486 42666995 ~ 42741571 (-)
G259259 sdpr other downstream 522671 41763817 ~ 41767588 (-)
G256632 NA other downstream 1954819 40335210 ~ 40335440 (-)
G256616 NA other downstream 1967361 40322506 ~ 40322898 (-)
G256016 LOC106581772 other downstream 2471279 39818648 ~ 39818980 (-)
G255911 NA other downstream 2644516 39644571 ~ 39645743 (-)
G261580 NA other upstream 1687015 43989524 ~ 44031505 (-)
G262993 NA other upstream 2707663 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 2796831 45099333 ~ 45104286 (-)
G263274 NA other upstream 3233823 45536332 ~ 45537542 (-)
G265988 NA other upstream 5296709 47599218 ~ 47599815 (-)

Expression


Co-expression Network