G259830


Basic Information

Item Value
gene id G259830
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42666995 ~ 42741571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU295738
tggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcacttgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaggggggctgaataattttgcacgcccaatttttcagtttttgagttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgt
>TU295737
tggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcacttgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaggggggCTAGGTGGTTTTGGCTgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU295738 False 363 lncRNA 0.40 2 42666995 42741571
TU295737 True 336 lncRNA 0.41 3 42710722 42741571

Neighbor

gene id symbol gene type direction distance location
LOC118955837 NA coding downstream 49819 42592366 ~ 42617176 (-)
LOC110520683 NA coding downstream 209289 42455124 ~ 42457706 (-)
LOC110519982 LOC106586070 coding downstream 302727 42339910 ~ 42364268 (-)
LOC118936375 LOC106581667 coding downstream 327341 42334907 ~ 42339654 (-)
LOC110519978 LOC106586070 coding downstream 332200 42329639 ~ 42334795 (-)
LOC110519987 LOC106586109 coding upstream 205173 42946744 ~ 43004057 (-)
LOC110519985 LOC106586111 coding upstream 274129 43015700 ~ 43051414 (-)
LOC110519993 LOC106586116 coding upstream 779760 43521331 ~ 43626170 (-)
LOC118956029 NA coding upstream 965310 43706881 ~ 43741802 (-)
LOC110519998 LOC106586121 coding upstream 1490428 44231999 ~ 44235888 (-)
G259779 NA non-coding downstream 76635 42586284 ~ 42590360 (-)
G259700 NA non-coding downstream 219481 42447287 ~ 42447514 (-)
G259691 NA non-coding downstream 227489 42439280 ~ 42439506 (-)
G259685 NA non-coding downstream 233577 42433201 ~ 42433418 (-)
col6a3 LOC106598405 non-coding downstream 352308 42291728 ~ 42329627 (-)
G259941 NA non-coding upstream 88925 42830496 ~ 42894992 (-)
G259954 nckap5 non-coding upstream 114748 42856319 ~ 42863117 (-)
G259959 NA non-coding upstream 126278 42867849 ~ 42873169 (-)
G259960 NA non-coding upstream 126990 42868561 ~ 42869607 (-)
G260762 NA non-coding upstream 475370 43216941 ~ 43217190 (-)
G259576 LOC106599288 other downstream 339000 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 347610 42290259 ~ 42319385 (-)
G259259 sdpr other downstream 899407 41763817 ~ 41767588 (-)
G256632 NA other downstream 2331555 40335210 ~ 40335440 (-)
G261580 NA other upstream 1247953 43989524 ~ 44031505 (-)
G262993 NA other upstream 2268601 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 2357769 45099333 ~ 45104286 (-)
G263274 NA other upstream 2794761 45536332 ~ 45537542 (-)
G265988 NA other upstream 4857647 47599218 ~ 47599815 (-)

Expression


Co-expression Network