G259960


Basic Information

Item Value
gene id G259960
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42868561 ~ 42869607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU295876
agtgggctcactctgccaagttggtcgcatcttacgcagtctttcttttcgcaaccctgcgtcttggtcagaacagctcccctgggcagaatacgcccacaactcgcttccttcgtctgcgaccgggctatctccttttcagagtagcctcgggtaccagcctccgctgttctcatctcagttcgccgagtccagcgtcccctccgctcaggcttttgtccaacgttgcgagcgcacctggaagagggtcaggtctgcactttgccgttatagggcgcagactgtgagagctgctaataagcgaagaactaagagtcctagatattgtcgcggtcagagagtttggctctccactcagaaccttccccttaagacagcttctcgcaagttgaccccgcggttcattggtccgttccgtatttctcggatcattaatcctgtcgcagtgcgacttcttcttccgcgatatcttcgtcgcgtccacccggtcttccatgtctcctgtgtcaagcccgttcttcgcgcccccgctcgtcttcccc

Function

NR:

description
PREDICTED: uncharacterized protein LOC109108415

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU295876 True 542 lncRNA 0.56 2 42868561 42869607

Neighbor

gene id symbol gene type direction distance location
LOC118955837 NA coding downstream 251385 42592366 ~ 42617176 (-)
LOC110520683 NA coding downstream 410855 42455124 ~ 42457706 (-)
LOC110519982 LOC106586070 coding downstream 504293 42339910 ~ 42364268 (-)
LOC118936375 LOC106581667 coding downstream 528907 42334907 ~ 42339654 (-)
LOC110519978 LOC106586070 coding downstream 533766 42329639 ~ 42334795 (-)
LOC110519987 LOC106586109 coding upstream 77137 42946744 ~ 43004057 (-)
LOC110519985 LOC106586111 coding upstream 146093 43015700 ~ 43051414 (-)
LOC110519993 LOC106586116 coding upstream 651724 43521331 ~ 43626170 (-)
LOC118956029 NA coding upstream 837274 43706881 ~ 43741802 (-)
LOC110519998 LOC106586121 coding upstream 1362392 44231999 ~ 44235888 (-)
G259954 nckap5 non-coding downstream 5444 42856319 ~ 42863117 (-)
G259830 NA non-coding downstream 126990 42666995 ~ 42741571 (-)
G259828 NA non-coding downstream 185820 42679991 ~ 42682741 (-)
G259779 NA non-coding downstream 278201 42586284 ~ 42590360 (-)
G259700 NA non-coding downstream 421047 42447287 ~ 42447514 (-)
G260762 NA non-coding upstream 347334 43216941 ~ 43217190 (-)
G260771 NA non-coding upstream 356681 43226288 ~ 43226682 (-)
G260776 NA non-coding upstream 362426 43232033 ~ 43232277 (-)
G260792 NA non-coding upstream 380735 43250342 ~ 43250568 (-)
G260914 NA non-coding upstream 554747 43424354 ~ 43510022 (-)
G259576 LOC106599288 other downstream 540566 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 549176 42290259 ~ 42319385 (-)
col6a3 LOC106598405 other downstream 553203 42291728 ~ 42329627 (-)
G259259 sdpr other downstream 1100973 41763817 ~ 41767588 (-)
G256632 NA other downstream 2533121 40335210 ~ 40335440 (-)
G261580 NA other upstream 1119917 43989524 ~ 44031505 (-)
G262993 NA other upstream 2140565 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 2229733 45099333 ~ 45104286 (-)
G263274 NA other upstream 2666725 45536332 ~ 45537542 (-)
G265988 NA other upstream 4729611 47599218 ~ 47599815 (-)

Expression


Co-expression Network