G262325


Basic Information

Item Value
gene id G262325
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44417940 ~ 44420223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU298355
attaacgaaaaacttttgacctgtagtgtatatatttttttttattgactaaATCTAGCAAAACTGAATAAGTTGTCACTCGTGTTTTTATGATGACAATTTGTAGACACTGCCCAAATTGCATGTGAGAAAATAGTGTACTTTGATTTCAGAGTTCATAACATGATTGCTATTTCATATGAATTGGTTTTCGGAAAAACGTATCCCCACCTAGTGAATATGACATGTTTTAAGGAGTTTAATTTACATAGATTTTGTTTTTAAAGATTAATAAGCAATGATTTATAAGATGAAGCCATACTATGCTGGTGAAATTGCACTAGAATATACACGATATGGTTAATGAatgaaaatgtgaagatgaaaaaaacaaaaacaagtggATCGCAGTCTAAGTCCCTAACAACCCAACATTTTACACTAACATGTTTATTTGTCCATGCTGAAAATAACAAAGTTTTCATGCTGAACTTGTTTCACTTACGAAGCCAAAACGGTCACTTCAATTGGATACAGAACCAAACTGCACATTTATTACATTTAAATAGTTATTTACCTTCTTACACAAGTGTAAAAAAGTAATACTGTATACAGATTTTAATCCATTTCATATCAGTATTATTAGCTAGCACATCAAATGTCCATGTTAACATACATAAAATAATGTACTCTTAAACCTGTGTAGTAACACTCATTTCTTTAGTAAGAGCATTTGCTAGGGTATTAGGATACATATAGTGCTTGAGCAATTgaatcttaactgacttgcctagttttttATTGaattaaggacaaattcttattcacaatgaaggcctaccccggccaaatccggacgacgctgggccaattgtgcactgccctatgggactcccaatcactgccgaaTGTGAAGCAGGCTGGATTCGAATCCGATACTGCAGTGATTccccttgcactgagatgcagtgtcttagactgagTGGCATACTGTACAACGAAACTTTTTACTGAATTTCCTGCAAAGCAAACCCCATTTAGGGAACGCTTAGTATTTCCATGTATTTTTAAGAAAGTTTATAGTGTAAATGGTCCTATTTGTTTCATACTCACAGTTATGATGTATATTTTGAGTCTGTGTCAGTTCACACATGAGTATAATTTTTGTTGTGGAGTGAAATGGttatatttaaataaaataaatgattgtCCTTTTGATTATTTTCATTAGAGATTGAGTATGGTTTGGGGTATACTGTAGACTCTGCTAACATTAGGATGGAAAAGAACAACCAATATTTTCCTTTTATAATCTTGGCCCTTTCTATCGGGATAGGCTATACGG
>TU298353
cagagaactggaacgaaaggcggccgaatgaggtgttggctttagggatgatcagtgagatacacctgctggagcgcgtgttacggatgggtgttgccatcgtgaccagtgaactgagataaggcggagctttacctagcatggacttgtagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccagccgactagagcatacaagttgcagtggtgggtggtataaggtgctttagtgacaaaacagatggcactgtgataaactgcatccagtttgctgagtagagtgttggaagcaattttgtagatgacattgccgaagttgaggatcggtaggatagtcagttttactagggtaagtttggcggcgtgagtgaaggaggctttgttgcggaatagaaagccgattcttcatttgattttcgattggagatgtttgatatgattctggaaggagagttactctgaggtaactctgggtcttccattcctgcgGCGGTCCTCAtagggcttgatggtttttgcgactgcacttgaagaactttcaaagttcttgaaattttccgtattgactgaccattTCTTagtcatgatggactgtcgtttctctttgctaatttgagATGTTATTCCCATGATATAGatttagccctatttggtaaaataccatcttctgtatacacagctgattggctcaaacgcattaacttttcagaaggcacacctgttaattgaaattcattccaggtgaccagctcatgaagctggtttagagaatgccaacagtgtgcaaagctgtcatcaaggcgaagggtggctatttgaagaatctcaaaatataaaatatatttagagttGTTTAAAAATGTtgggttaatacatgattccgtatgtgttatttcatagtattgatgtctACTATTATTcgacaacgtagaaaatagtaaattaacgaaaaacttttgacctgtagtgtatatatttttttttattgactaaATCTAGCAAAACTGAATAAGTTGTCACTCGTGTTTTTATGATGACAATTTGTAGACACTGCCCAAATTGCATGTGAGAAAATAGTGTACTTTGATTTCAGAGTTCATAACATGATTGCTATTTCATATGAATTGGTTTTCGGAAAAACGTATCCCCACCTAGTGAATATGACATGTTTTAAGGAGTTTAATTTACATAGATTTTGTTTTTAAAGATTAATAAGCAATGATTTATAAGATGAAGCCATACTATGCTGGTGAAATTGCACTAGAATATACACGATATGGTTAATGAatgaaaatgtgaagatgaaaaaaacaaaaacaagtggATCGCAGTCTAAGTCCCTAACAACCCAACATTTTACACTAACATGTTTATTTGTCCATGCTGAAAATAACAAAGTTTTCATGCTGAACTTGTTTCACTTACGAAGCCAAAACGGTCACTTCAATTGGATACAGAACCAAACTGCACATTTATTACATTTAAATAGTTATTTACCTTCTTACACAAGTGTAAAAAAGTAATACTGTATACAGATTTTAATCCATTTCATATCAGTATTATTAGCTAGCACATCAAATGTCCATGTTAACATACATAAAATAATGTACTCTTAAACCTGTGTAGTAACACTCATTTCTTTAGTAAGAGCATTTGCTAGGGTATTAGGATACATATAGTGCTTGAGCAATTgaatcttaactgacttgcctagttttttATTGaattaaggacaaattcttattcacaatgaaggcctaccccggccaaatccggacgacgctgggccaattgtgcactgccctatgggactcccaatcactgccgaaTGTGAAGCAGGCTGGATTCGAATCCGATACTGCAGTGATTccccttgcactgagatgcagtgtcttagactgagTGGCATACTGTACAACGAAACTTTTTACTGAATTTCCTGCAAAGCAAACCCCATTTAGGGAACGCTTAGTATTTCCATGTATTTTTAAGAAAGTTTATAGTGTAAATGGTCCTATTTGTTTCATACTCACAGTTATGATGTATATTTTGAGTCTGTGTCAGTTCACACATGAGTATAATTTTTGTTGTGGAGTGAAATGGttatatttaaataaaataaatga
>TU298354
attaacgaaaaacttttgacctgtagtgtatatatttttttttattgactaaATCTAGCAAAACTGAATAAGTTGTCACTCGTGTTTTTATGATGACAATTTGTAGACACTGCCCAAATTGCATGTGAGAAAATAGTGTACTTTGATTTCAGAGTTCATAACATGATTGCTATTTCATATGAATTGGTTTTCGGAAAAACGTATCCCCACCTAGTGAATATGACATGTTTTAAGGAGTTTAATTTACATAGATTTTGTTTTTAAAGATTAATAAGCAATGATTTATAAGATGAAGCCATACTATGCTGGTGAAATTGCACTAGAATATACACGATATGGTTAATGAatgaaaatgtgaagatgaaaaaaacaaaaacaagtggATCGCAGTCTAAGTCCCTAACAACCCAACATTTTACACTAACATGTTTATTTGTCCATGCTGAAAATAACAAAGTTTTCATGCTGAACTTGTTTCACTTACGAAGCCAAAACGGTCACTTCAATTGGATACAGAACCAAACTGCACATTTATTACATTTAAATAGTTATTTACCTTCTTACACAAGTGTAAAAAAGTAATACTGTATACAGATTTTAATCCATTTCATATCAGTATTATTAGCTAGCACATCAAATGTCCATGTTAACATACATAAAATAATGTACTCTTAAACCTGTGTAGTAACACTCATTTCTTTAGTAAGAGCATTTGCTAGGGTATTAGGATACATATAGTGCTTGAGCAATTgaatcttaactgacttgcctagttttttATTGaattaaggacaaattcttattcacaatgaaggcctaccccggccaaatccggacgacgctgggccaattgtgcactgccctatgggactcccaatcactgccgaaTGTGAAGCAGGCTGGATTCGAATCCGATACTGCAGTGATTccccttgcactgagatgcagtgtcttagactgagTGGCATACTGTACAACGAAACTTTTTACTGAATTTCCTGCAAAGCAAACCCCATTTAGGGAACGCTTAGTATTTCCATGTATTTTTAAGAAAGTTTATAGTGTAAATGGTCCTATTTGTTTCATACTCACAGTTATGATGTATATTTTGAGTCTGTGTCAGTTCACACATGAGTATAATTTTTGTTGTGGAGTGAAATGGttatatttaaataaaataaatga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298355 False 1324 lncRNA 0.34 1 44417940 44419263
TU298353 False 2145 lncRNA 0.38 1 44418079 44420223
TU298354 True 1185 lncRNA 0.34 1 44418079 44419263

Neighbor

gene id symbol gene type direction distance location
LOC110519999 LOC106586089 coding downstream 123889 44290826 ~ 44294051 (-)
LOC118956139 NA coding downstream 154942 44259169 ~ 44262998 (-)
LOC110519998 LOC106586121 coding downstream 182052 44231999 ~ 44235888 (-)
LOC118956029 NA coding downstream 676138 43706881 ~ 43741802 (-)
LOC110519993 LOC106586116 coding downstream 791770 43521331 ~ 43626170 (-)
LOC110520000 NA coding upstream 5145 44425368 ~ 44468711 (-)
LOC110520004 LOC106586125 coding upstream 103487 44523710 ~ 44718478 (-)
LOC118956426 NA coding upstream 518512 44938735 ~ 44940312 (-)
LOC110520006 LOC106581857 coding upstream 521136 44941359 ~ 44957343 (-)
LOC110520007 NA coding upstream 524498 44944721 ~ 44947818 (-)
G261950 NA non-coding downstream 11284 44406409 ~ 44406656 (-)
G261924 NA non-coding downstream 38648 44379089 ~ 44379292 (-)
G261875 NA non-coding downstream 86769 44330951 ~ 44331171 (-)
G261871 NA non-coding downstream 93966 44323749 ~ 44323974 (-)
G261868 NA non-coding downstream 95799 44321941 ~ 44322141 (-)
G262326 NA non-coding upstream 2268 44422491 ~ 44423077 (-)
G262368 NA non-coding upstream 72748 44492971 ~ 44493212 (-)
G262377 NA non-coding upstream 82637 44502860 ~ 44503066 (-)
G262406 NA non-coding upstream 146100 44566323 ~ 44643648 (-)
G262342 NA non-coding upstream 243682 44663905 ~ 44665382 (-)
G261580 NA other downstream 386435 43989524 ~ 44031505 (-)
G259576 LOC106599288 other downstream 2089945 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 2098555 42290259 ~ 42319385 (-)
col6a3 LOC106598405 other downstream 2102582 42291728 ~ 42329627 (-)
G259259 sdpr other downstream 2650352 41763817 ~ 41767588 (-)
G262993 NA other upstream 589949 45010172 ~ 45012249 (-)
LOC110520012 cssa21h2orf88 other upstream 679117 45099333 ~ 45104286 (-)
G263274 NA other upstream 1116109 45536332 ~ 45537542 (-)
G265988 NA other upstream 3178995 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 3611824 48032036 ~ 48033434 (-)

Expression


Co-expression Network