G261971


Basic Information

Item Value
gene id G261971
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44418107 ~ 44420220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU297973
TCACTCCACAACAAAAATTATACTCATGTGTGAACTGACACAGACTCAAAATATACATCATAACTGTGAGTATGAAACAAATAGGACCATTTACACTATAAACTTTCTTAAAAATACATGGAAATACTAAGCGTTCCCTAAATGGGGTTTGCTTTGCAGGAAATTCAGTAAAAAGTTTCGTTGTACAGTATGCCActcagtctaagacactgcatctcagtgcaaggggAATCACTGCAGTATCGGATTCGAATCCAGCCTGCTTCACAttcggcagtgattgggagtcccatagggcagtgcacaattggcccagcgtcgtccggatttggccggggtaggccttcattgtgaataagaatttgtccttaattCAATaaaaaactaggcaagtcagttaagattcAATTGCTCAAGCACTATATGTATCCTAATACCCTAGCAAATGCTCTTACTAAAGAAATGAGTGTTACTACACAGGTTTAAGAGTACATTATTTTATGTATGTTAACATGGACATTTGATGTGCTAGCTAATAATACTGATATGAAATGGATTAAAATCTGTATACAGTATTACTTTTTTACACTTGTGTAAGAAGGTAAATAACTATTTAAATGTAATAAATGTGCAGTTTGGTTCTGTATCCAATTGAAGTGACCGTTTTGGCTTCGTAAGTGAAACAAGTTCAGCATGAAAACTTTGTTATTTTCAGCATGGACAAATAAACATGTTAGTGTAAAATGTTGGGTTGTTAGGGACTTAGACTGCGATccacttgtttttgtttttttcatcttcacattttcatTCATTAACCATATCGTGTATATTCTAGTGCAATTTCACCAGCATAGTATGGCTTCATCTTATAAATCATTGCTTATTAATCTTTAAAAACAAAATCTATGTAAATTAAACTCCTTAAAACATGTCATATTCACTAGGTGGGGATACGTTTTTCCGAAAACCAATTCATATGAAATAGCAATCATGTTATGAACTCTGAAATCAAAGTACACTATTTTCTCACATGCAATTTGGGCAGTGTCTACAAATTGTCATCATAAAAACACGAGTGACAACTTATTCAGTTTT
>TU297972
CTCAAAATATACATCATAACTGTGAGTATGAAACAAATAGGACCATTTACACTATAAACTTTCTTAAAAATACATGGAAATACTAAGCGTTCCCTAAATGGGGTTTGCTTTGCAGGAAATTCAGTAAAAAGTTTCGTTGTACAGTATGCCActcagtctaagacactgcatctcagtgcaaggggAATCACTGCAGTATCGGATTCGAATCCAGCCTGCTTCACAttcggcagtgattgggagtcccatagggcagtgcacaattggcccagcgtcgtccggatttggccggggtaggccttcattgtgaataagaatttgtccttaattCAATaaaaaactaggcaagtcagttaagattcAATTGCTCAAGCACTATATGTATCCTAATACCCTAGCAAATGCTCTTACTAAAGAAATGAGTGTTACTACACAGGTTTAAGAGTACATTATTTTATGTATGTTAACATGGACATTTGATGTGCTAGCTAATAATACTGATATGAAATGGATTAAAATCTGTATACAGTATTACTTTTTTACACTTGTGTAAGAAGGTAAATAACTATTTAAATGTAATAAATGTGCAGTTTGGTTCTGTATCCAATTGAAGTGACCGTTTTGGCTTCGTAAGTGAAACAAGTTCAGCATGAAAACTTTGTTATTTTCAGCATGGACAAATAAACATGTTAGTGTAAAATGTTGGGTTGTTAGGGACTTAGACTGCGATccacttgtttttgtttttttcatcttcacattttcatTCATTAACCATATCGTGTATATTCTAGTGCAATTTCACCAGCATAGTATGGCTTCATCTTATAAATCATTGCTTATTAATCTTTAAAAACAAAATCTATGTAAATTAAACTCCTTAAAACATGTCATATTCACTAGGTGGGGATACGTTTTTCCGAAAACCAATTCATATGAAATAGCAATCATGTTATGAACTCTGAAATCAAAGTACACTATTTTCTCACATGCAATTTGGGCAGTGTCTACAAATTGTCATCATAAAAACACGAGTGACAACTTATTCAGTTTTGCTAGATttagtcaataaaaaaaaatatatacactacaggtcaaaagtttttcgttaatttactattttctacgttgtcgAATAATAGTagacatcaatactatgaaataacacatacggaatcatgtattaacccaACATTTTTAAACaactctaaatatattttatattttgagattcttcaaatagccacccttcgccttgatgacagctttgcacactgttggcattctctaaaccagcttcatgagctggtcacctggaatgaatttcaattaacaggtgtgccttctgaaaagttaatgcgtttgagccaatcagctgtgtatacagaagatggtattttaccaaatagggctaaatCTATATCATGGGAATAACATctcaaattagcaaagagaaacgacagtccatcatgactAAGAaatggtcagtcaatacggaaaatttcaagaactttgaaagttcttcaagtgcagtcgcaaaaaccatcaagccctaTGAGGACCGCcgcaggaatggaagacccagagttacctcagagtaactctccttccagaatcatatcaaacatctccaatcgaaaatcaaatgaagaatcggctttctattccgcaacaaagcctccttcactcacgccgccaaacttaccctagtaaaactgactatcctaccgatcctcaacttcggcaatgtcatctacaaaattgcttccaacactctactcagcaaactggatgcagtttatcacagtgccatctgttttgtcactaaagcaccttataccacccaccactgcaacttgtatgctctagtcggctggccctcgctacatattcgtcgccagacccactggctccaggtcatctacaagtccatgctaggtaaagctccgccttatctcagttcactggtcacgatggcaacacccatcc
>TU297971
ggaatgaatttcaattaacaggtgtgccttctgaaaagttaatgcgtttgagccaatcagctgtgtatacagaagatggtattttaccaaatagggctaaatCTATATCATGGGAATAACATctcaaattagcaaagagaaacgacagtccatcatgactAAGAaatggtcagtcaatacggaaaatttcaagaactttgaaagttcttcaagtgcagtcgcaaaaaccatcaagccctaTGAGGACCGCcgcaggaatggaagacccagagttacctcagagtaactctccttccagaatcatatcaaacatctccaatcgaaaatcaaatgaagaatcggctttctattccgcaacaaagcctccttcactcacgccgccaaacttaccctagtaaaactgactatcctaccgatcctcaacttcggcaatgtcatctacaaaattgcttccaacactctactcagcaaactggatgcagtttatcacagtgccatctgttttgtcactaaagcaccttataccacccaccactgcaacttgtatgctctagtcggctggccctcgctacatattcgtcgccagacccactggctccaggtcatctacaagtccatgctaggtaaagctccgccttatctcagttcactggtcacgatggcaacacccatccgtaacacgcgctccagcaggtgtatctcactgatcatccctaaagccaacacctcattcggccgcctttcgttccagttct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297973 False 1098 lncRNA 0.35 1 44418107 44419204
TU297972 False 1989 lncRNA 0.37 1 44418151 44420139
TU297971 True 755 lncRNA 0.45 1 44419466 44420220

Neighbor

gene id symbol gene type direction distance location
LOC110504116 LOC106586120 coding upstream 210002 44075822 ~ 44208107 (+)
LOC118956122 NA coding upstream 431149 43943124 ~ 43986958 (+)
LOC110519997 lct coding upstream 522459 43876264 ~ 43895648 (+)
LOC110519995 LOC106586118 coding upstream 542287 43857089 ~ 43875820 (+)
LOC110519994 LOC100380648 coding upstream 572478 43830961 ~ 43845629 (+)
LOC110520002 LOC106586124 coding downstream 49951 44470171 ~ 44475272 (+)
LOC118964364 NA coding downstream 414291 44834511 ~ 44834565 (+)
cd18 cd18 coding downstream 458440 44878660 ~ 44903676 (+)
LOC110520005 LOC106586127 coding downstream 483814 44904034 ~ 44930884 (+)
LOC110520010 LOC106586134 coding downstream 568888 44989108 ~ 45010624 (+)
G261957 NA non-coding upstream 7966 44409905 ~ 44410141 (+)
G261908 NA non-coding upstream 50671 44367212 ~ 44367436 (+)
G261888 NA non-coding upstream 71786 44345999 ~ 44346321 (+)
G261872 NA non-coding upstream 91884 44325991 ~ 44326223 (+)
G261870 NA non-coding upstream 94565 44323306 ~ 44323542 (+)
G261972 NA non-coding downstream 2271 44422491 ~ 44423084 (+)
G262016 NA non-coding downstream 71436 44491656 ~ 44491982 (+)
G262024 NA non-coding downstream 80123 44500343 ~ 44500597 (+)
G262028 NA non-coding downstream 87532 44507752 ~ 44508091 (+)
G262035 NA non-coding downstream 95980 44516200 ~ 44516484 (+)
G261749 NA other upstream 165556 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 3965927 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 4750019 39658753 ~ 39668297 (+)
G254816 NA other upstream 5573551 38843510 ~ 38844556 (+)
G254445 NA other upstream 5817241 38600487 ~ 38600866 (+)
G262037 NA other downstream 100199 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 1418701 45838921 ~ 45839480 (+)
G263710 NA other downstream 1513899 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 1655264 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 1763914 46184134 ~ 46184804 (+)

Expression


Co-expression Network