G262585


Basic Information

Item Value
gene id G262585
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 44892408 ~ 44903669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU298634
GAGAGAGTTTTATTTGTAATGAAAAATATCAGTGATCGTTTGCTGCTTTACACAATATTTCCTCATAGGATATGTAGAGTCATGGTACATTGTAGATTTGTAAATAAAAGCTACAAAAATAATTGCTGTAAGAAATATCATtgagttacacaatacattatttgaaACTTTAGGATGATTTGGATATAAAGCGTGAATTATCCTAATATAGGTACCATTaacttgcattggatttgtgacacaaatgctaaaaagttagcatttgaaacagtggcaaggtaaacaaaaccaaataATGGGTTGCTGTCATACCTGGTCCGtaaactgcttacagggtaagaaaATCTTTAATAAATTATCCCCAAATAGCAGGAACAGCACCATTTAGTGGTCAGGATGTAGGACCCAACAACTTCAATGACTAATTCCTCTGAACAGGGGAAAAAAACCTCACTCaattcactgagaatacattaCATTGGTTGAAGGAACAAAATTAATTAATAGGGGGGGGTCCGTGGATGGCTTTTGACCACTTCTTttgattcctcatgtcttaccCATTGTTATCaaaagtttggtccaaatcggatATTAGGTACTATAATtgttgaatattatatgaatcctataaattaaaatggccaatttccGTGCAAtaaattagcttaatttctcagagatcaaatatTGTtccaacaaaataatgttgcaggaatgctaacGTTAACAGAAACCATTTCAGAATAATCTGAGACGGTGGGTGTCAAAAACCTCTTACTTGGTCTTTTTTTAGGTGGAAGGACCCTGTAGCAACATTGCAGCAGTTTTTTTCCAATCAGTGCATGATCATTCTTGAATTCAGTCTTGGAACACATAAAAAAATACTATTTGTAAACCAACTTataaattgtggagaaaaaaaagcacattaaaacagaaacaataaaTGTACATGTATTTGAATCCAACTTGATTGTCTGGGCTGACTGATGTTGATCTTATTCTCCAGTGAAGGTAGGGTTAGCCACGGTGGTGGTCGCGTTCATGAATAGTGGATTGTCTCCCGGGGACCACTTTCCTTTCTTCTGCTCATTCTCAAACCTGCGGAACTCCTTCACGTCTCTCATGTAGAGGATGGCTTTGATGATGAGCAGGATCAGTAAGCCGATCAGGGCCACGCCCGCAATGGAGCCTCCAATGATGGCGTAGATGTTTGGCAACTCCGGACATTCTAAAACAATTATGACAGACATTAACAACCATACATTTTTAGGCCGTCCTGGAGGCTGTAGCATGTTACGTTTACTGTGAAAACATTTGGTAGCAAACATCTCTCGGACACTGTGATTCAGATGCTTTCAATGTGACTTGGAGGCTTTATCTTGATGCCCATCAAACAACGTGGTCGGTCAACTAAAACACCCAGCAAACATGATCTGTTTTCTGTGGGCTATGAAGGTAACATGGGCATACTTTTTAGTTGCACAAGACATACGTCTCTTACCTCTGGTCTTTAGTATCTGGGCGGAGTAGTTGTCCTCTCCATCCAACTGTTTAATGATAAAGAACACCCGGCAGTTCTCCACATCCCTCACGTCACAAGGCTTACCAGGTGGCAATGTCTCCACCATCTCAAATTCATTAATACTCTTACAGGTCTGGGAGCAGTTCTTGCTGAACGGGCCTGTCTGAAAGCCCAGACACTCGATGCACTTCCTGAAAATAGAAGAACGAGGTAGAGAGTGGAAAACTTCCTTGCTCAACATTTTGTCTTCTCCCTTTAAGGACTTCAACACATGCTTTGGTTCCAAAACCCCTCGCGTTGAGTAAGATGGCAACACGCAGAAATGATATTTTTAAGTGCTACATTCTATTCTACCAGTCATCCTTTACGGTCAATGGTAACCGTCTTTGTTTGTCCTATGGTTGTGATGCAATTTAACATGTACACGATGGATCCAACAACATTACCTAAAGGGGCCAGTGAATACAGTGGTTGAGTGAGTGAAAAAGGTGGGCCCAGGCCGTCTTACCCCTTGGTTATACAGGGAGTCTGGCAGGCGGGACAGGTCAGACAGTAGGGCCGCTGGTAGCCCTCGATACACTTGCACTGGTTACACTGGCATGTGCCCCTGCCGCTGCACACGCTCCCGCTTGGTGTGCGACACTGCTCATCCGACTTCTTGCATTGGCAGGCGGTGCCTTCGTACTCGGGGTTGCATTCGCAAATTTTACAACGGCATTTCCCGTTCccttcTCCACACAGTTTGTTCTGAAACTTCTCGCAGCTCTCGTTTTCACACTCGCAGTGCGTGCCGTAGTAGGTGCTGCCGCCTTGTTGGGCATAGCACTGgcaaatgccacacacacagtcccctcGTCCTTCGCACTCCGTGCCGTTGTCCTTCCGGCATGCCGCCCTCAGAGAGCTCTCGTCCTTCTCCCCGATGGCGCACTCGCACTTCTGACCCACGAAGCCGGCATTGCAACTGCACAGAGTTGGGAGGAAAAAGCCTACTGTACTGATTGCTTGTGAAGACTTTACATTTACCACCCCCCAAAATTGTGGTGTCTTTTTGTTCCCCCTGAGTACAGAGaatagaaatacagtatagaAAATAGAATGAAATAGATGGTTCATAACAATCCATGTTTCTCAGTTTCTTTGTTTTTCAGGTGACTCAATGCACTTCTAGGGGGATGAAGGGGAAATCATGCATCATATATTGGATTAAATATTGACTATATCAACATAAGTTGGAATATATTGGGGAAACAAAAGCACATGCTATTTGTTGTATATCCCAACCAATGCCCGCCTTACCTGCACATGCCACATTTGACTTTACCCTTCCCGTCGCAGTCCTTGTGATTCTCCTCCTTGGGGTCATCACATTCACACTCGCAGCGAGTCGACAAGCTCACCTTCAGCTTGTCTTTTATGCCCAATGGGCCAATCAGAAAAGACCTCTCCCTGTCTATACATTCATCTGCCGTCACTGTTACGTTGAAAGACACCTGAGAGGAATTCAGGAGACGCAATGAGTAAATTTGTGGTATGTGTTTGGATGTTTTTTTTGCTATTTATTATCATTTAACTAAATGGatACTGCaattgatgaatttatgaaattgcttcttccaattattcataaacatgcacctgttaagaaactgactgttggAACTGTTAAGGCTcaatggattgatgaggaattgaaaaactgtgtggttgaaagagatggggcaaaaggagtggctaataagtctggctgcacatctgactggctgacttactgcaaattgaggaattatgtgactaaactcaacaaaaataaacagaaaCTGTATTAtaaagccaagatcaatgatatgaagaatgatggaaaaaaactttgaagtactttaaattaaattatgggcagaaaaaCAAATTCAattccatctttcatcgaatcagatggcttattcaccAATTATTTTAGCGATTACTTCATTACATGTAGCAAATTgtgcaaacttaggcaggaaatgacaacaacgaacagtgagccattgtattcatgcataaaaaaagaAAAGCATCGCAACTATGAAAGAAAAGTTTTGCAAGTTtcaattttgtaaagttagtgtgggagatgTGAAAAAGGATTGTTATCGATCGacaatgacaaacctcctggcattgataacatagatggaaagctactgaggatggtagctgactctatagccactcatATCTGTCATATCATTCATCTGGGCCTacaggaaagtctttgtcctcagacctggagggaagccaaagtaatttcgctacccaagagtggtaaagcggcctttattGGTTgaaacagcagacctatcagttTGCCGCCAGCTCTGAGCAAACTGTTGGgatattgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctatttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaattcAGGTAacgaggaagacagaggagcctcttaaagacgaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaataaattcattaaaaatcctacaatgtgattttctggattttcttcttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtagctgactaaatactttttgccccactgtatctaatagaactcaacgggttttctttaatggtatcttctctaatgtcaaacatgtaaagtgtggtgtaccacagggcagatttctaggccctctactcttttatATGTTTACTAATGAACTGCCATatgcattaaacaaagcatgtgtgttcatGTATGCTGAGGATTCAACCATaaacgcatcagcaaccacagctaatgaagtcactgaaacccttaacaaagagttgcagtctgttttggaatgcggcgggggggggggggggggggggggggggggggtacatacCATAAATGTACATAAGTGTTTACAAAGAAATGAAATACATATTACTGTTTTATCAATAGTTGATTAATACTTCAGTTATTATCAAGTGTTACCATATAAATATTTGGTATGTGATAGTCTTTTACTTCTGATCTCTTACCAAGTCTCCTACTTTGACGTTATCACAGACCCCCTTGTCCCCTGCGGGTCCCCCTCCAGGACAGAGTGGAGTGTAAGTGACTCTCACATTGTCAGGGAGAGCATCATGAGTCACTGTCACTTTGGAGGAGAGCCTCTGTGTCAGACACAAAACAGTCTCAGAGTTGACACCAATGCTAAATCAccagaaaaaaaacatcacaaGCAAATCCAAACTGATACATTATTCCTAGAGATACTAGAGGTTTATGATAAAAATCAAGCAAGGTTCTACACATTAAACACATAATTATTGGAGTACcatcttttttttaaagagattTGTTAAATGAATAAGAAAAGATTGTAAATATCTGAATAAGAATTAAACAAATATTGTAAATGTCTTACATTGTAGGCAGCTTGGATCAATTCAACAACATTTTTGGAGTCCTCTGACAATACTCCCACCTCAGACTTGGGGATCATTCTACTGAGTTCCTGGAAGATAGTtaggtaagacaacaacacatcacaatcgAATCAAGTACATTTCCCCTCAACAGagttttatgggggggggggtcaggtgtATTGTGAGAGTTATTTAGGATACTCTTCATTATTATGTGGCAGTATTAATAAGTTACTGCATTACATATGTTGGCGTTTATAACAGTAGAAAAACTgaggaagaaaaaaagaaagaatgaTCGAAATAAAGAGAGTCCACTTACCCTGTATACATTCTCCATGTTCTTTGTCACAGCAAAGATTGGCTGAATGTTGTTCTTCTCTAACTGCGAAGCCACTTGACCAACAGATGGGTAGTCCTACATACAGAGACACTTAACTTGTACAACCTCAAGAATGTAATTGTTTAGGGCCAAAAGGGTTGGAATATACAGGCTTTAGTTCAGTCCCAGTTCATTCATTACATATTTTTCATATTCTCTCATGGTATTTTTCATATCCAGTACAGTATATCAAAGTCTTGGTGAGGACCAATCATATTGATCTGAATGTGTCCCATGTCATCATCACATACCATGTCATTGCTCTTAGTGTACAGCTTGTTGTCCATGTAACATCTCTCGTCGTTGGGCTCCAGTATGCCAGCCAGCTTGCCATCCCCTGCCATGTGGAAGCCATCGTCGGTGGTCAGGACGATTAGCCGAGTGCTGCTATTCCTCCAGCCAATCCTGTCCTGTGGAAAACAATTGAAGGCTTCATGTAAAATGGATGGAAAAGATGCGAAAAAGTTTACATCCCACATTGGAGTTTTTT
>TU298633
GAGAGAGTTTTATTTGTAATGAAAAATATCAGTGATCGTTTGCTGCTTTACACAATATTTCCTCATAGGATATGTAGAGTCATGGTACATTGTAGATTTGTAAATAAAAGCTACAAAAATAATTGCTGTAAGAAATATCATtgagttacacaatacattatttgaaACTTTAGGATGATTTGGATATAAAGCGTGAATTATCCTAATATAGGTACCATTaacttgcattggatttgtgacacaaatgctaaaaagttagcatttgaaacagtggcaaggtaaacaaaaccaaataATGGGTTGCTGTCATACCTGGTCCGtaaactgcttacagggtaagaaaATCTTTAATAAATTATCCCCAAATAGCAGGAACAGCACCATTTAGTGGTCAGGATGTAGGACCCAACAACTTCAATGACTAATTCCTCTGAACAGGGGAAAAAAACCTCACTCaattcactgagaatacattaCATTGGTTGAAGGAACAAAATTAATTAATAGGGGGGGGTCCGTGGATGGCTTTTGACCACTTCTTttgattcctcatgtcttaccCATTGTTATCaaaagtttggtccaaatcggatATTAGGTACTATAATtgttgaatattatatgaatcctataaattaaaatggccaatttccGTGCAAtaaattagcttaatttctcagagatcaaatatTGTtccaacaaaataatgttgcaggaatgctaacGTTAACAGAAACCATTTCAGAATAATCTGAGACGGTGGGTGTCAAAAACCTCTTACTTGGTCTTTTTTTAGGTGGAAGGACCCTGTAGCAACATTGCAGCAGTTTTTTTCCAATCAGTGCATGATCATTCTTGAATTCAGTCTTGGAACACATAAAAAAATACTATTTGTAAACCAACTTataaattgtggagaaaaaaaagcacattaaaacagaaacaataaaTGTACATGTATTTGAATCCAACTTGATTGTCTGGGCTGACTGATGTTGATCTTATTCTCCAGTGAAGGTAGGGTTAGCCACGGTGGTGGTCGCGTTCATGAATAGTGGATTGTCTCCCTATTGAGAAAGATAGTAAATTACGTATGATGAAAAATCAGTAATGTATGGAACTCAGATATCTGGAGTGATAAATGCGGTGTCTTGTTTTAAATAGCTGCTGTCTTTGCCAGCCATACATTTATAGCAAATCACAACATTGGCATGGATTTCGACTTACGCACAGTTACTGATCAAATCTTGCAAAAGCGCTTTATAAACAAGTCTCCTCCGGTTCTGGAGACCAATGCTGTGCAGCTCTATCTATTCTCAAAGAGCCCGATCCCAATTAAGAATGTATGCCTTTCCtcctacgcacttctcagtatttggtattcagacttactgTATTTAGTCGAGTAACGCGCTCAGCAGGTGTGGCTACTTTGCGCACTctgaatacatttaattcaacCACTGAAACCATCCCGCTTGCGGCCAACATATTTtcgtggagttttcattcaatggGGTTTTCAGTACTTTTgtcttaagccatccctttaaatacgaaGCACCTTTAATTAGAATTTTgtcgacagactcaatagaatatattgcgagaacgggttcagaatataagggtcaatgaaagaaagccatctaTGCATATTCGTCTCCGTTTCAGCACCAACTGGTGGATTAAAAAAAGACTgatcttgtagattatttaggCATATTTTTTGGTTAGAAAAGTATGTATGAATCCTTGAAAAAAAACTTGGAGAGCATTTATGCACAAAACACTGtacagaaaatacattttgatttcttCTGAAAGTTACCATATTCGAGTTCAATCCATTAAATATTGGAATGTGAAAAAAAAGTACAATAGGGGTTGAACAATaatcctataaatctaccctaatTCTCAATGAGTttcataataattcaaatagGTTACGTGTCCTAAATTATTACACAACTTTAGCCTAAGATGATCCACTAATGCTAGCGACCCTCAAGAACAATTTACAAGGACATGAGAGGGGAAAGGAAGGTAaacggaatggaatggaatgatgcaaaatgaaatgtatgtgggtattactgacaGTGGCTAccgatagtggctaatatttagcatgatacaaattgtaaaataaaatggAGAAAGGCCTGGGCATATAAGGGTGCACATTTAGTTGCACATTTAGTTTTTTGtcatagcactacacagctgattcaaataatcaagtAATCACCAAGCATTGCACATTTTGGGGTCCCCACTACCGAGTTTGGAAACACTGGCATACATCAATTCGGCAGGTTCGACCCTACATAAGCCTATAGCTTGGATCTCCAAATTTCATGCACACATATTATAAGGGTACACAATCAGAATTCTGATCGGCACTGCTATTTATATCCCTTTTCACTGTGCAGTACATGTCATGTTCATATGattttcagtttgcttccatATGGCTGGTTTCCCATTAGTGTCCAGGGATCATAAGGAAAAATCATCTAAAAATAATTGCTATGCgtatttacaatccccttctcCAAATGGATTACTAATTGACACAGCTCTTATCGATAGACCTTACCAAGTTGTagattacagtgcatggagaatggtgcAATTTCTAAATGCACCAAATGTAAATGCTTTTTCCATTTGGAACTGGTAGGTTCGCTAGatcttattcatggtttcctcgcGCGTAAAGGTGGTAGAATTATTAGGGAACTAATTCAAGGTCACATATTCATTTATTCAAGCTCCACTTCAAACTAATAGTGGGTGAATATAGTATGttattctcatgcttaagttcTTTGTCAGAATACGCATAGAGAGAAAAGCACATAAAAAAGGGAATAATGAATCTGGGCCAAAGTGATGATTTCTATGAAGTAGCAAATGTCACTCACCGGGGACCACTTTCCTTTCTTCTGCTCATTCTCAAACCTGCGGAACTCCTTCACGTCTCTCATGTAGAGGATGGCTTTGATGATGAGCAGGATCAGTAAGCCGATCAGGGCCACGCCCGCAATGGAGCCTCCAATGATGGCGTAGATGTTTGGCAACTCCGGACATTCTCTGGTCTTTAGTATCTGGGCGGAGTAGTTGTCCTCTCCATCCAACTGTTTAATGATAAAGAACACCCGGCAGTTCTCCACATCCCTCACGTCACAAGGCTTACCAGGTGGCAATGTCTCCACCATCTCAAATTCATTAATACTCTTACAGGTCTGGGAGCAGTTCTTGCTGAACGGGCCTGTCTGAAAGCCCAGACACTCGATGCACTTCCCCTTGGTTATACAGGGAGTCTGGCAGGCGGGACAGGTCAGACAGTAGGGCCGCTGGTAGCCCTCGATACACTTGCACTGGTTACACTGGCATGTGCCCCTGCCGCTGCACACGCTCCCGCTTGGTGTGCGACACTGCTCATCCGACTTCTTGCATTGGCAGGCGGTGCCTTCGTACTCGGGGTTGCATTCGCAAATTTTACAACGGCATTTCCCGTTCcCTCCACACAGTTTGTTCTGAAACTTCTCGCAGCTCTCGTTTTCACACTCGCAGTGCGTGCCGTAGTAGGTGCTGCCGCCTTGTTGGGCATAGCACTGgcaaatgccacacacacagtcccctcGTCCTTCGCACTCCGTGCCGTTGTCCTTCCGGCATGCCGCCCTCAGAGAGCTCTCGTCCTTCTCCCCGATGGCGCACTCGCACTTCTGACCCACGAAGCCGGC

Function

NR:

description
CD18 protein precursor

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU298634 False 6156 lncRNA 0.41 5 44892408 44903669
TU298633 True 3758 lncRNA 0.40 4 44899096 44903669

Neighbor

gene id symbol gene type direction distance location
LOC110520004 LOC106586125 coding downstream 173930 44523710 ~ 44718478 (-)
LOC110520000 NA coding downstream 423697 44425368 ~ 44468711 (-)
LOC110519999 LOC106586089 coding downstream 598357 44290826 ~ 44294051 (-)
LOC118956139 NA coding downstream 629410 44259169 ~ 44262998 (-)
LOC110519998 LOC106586121 coding downstream 656520 44231999 ~ 44235888 (-)
LOC118956426 NA coding upstream 35066 44938735 ~ 44940312 (-)
LOC110520006 LOC106581857 coding upstream 37690 44941359 ~ 44957343 (-)
LOC110520007 NA coding upstream 41052 44944721 ~ 44947818 (-)
LOC110520009 LOC106586132 coding upstream 60743 44964412 ~ 44986254 (-)
LOC110520012 cssa21h2orf88 coding upstream 195664 45099333 ~ 45104286 (-)
G262592 NA non-coding downstream 50203 44841973 ~ 44842205 (-)
G262587 NA non-coding downstream 55151 44836977 ~ 44837257 (-)
G262578 NA non-coding downstream 70170 44822004 ~ 44822238 (-)
G262575 NA non-coding downstream 76756 44815427 ~ 44815652 (-)
G262342 NA non-coding downstream 227026 44663905 ~ 44665382 (-)
G262630 NA non-coding upstream 4658 44908327 ~ 44908593 (-)
G262667 NA non-coding upstream 56710 44960379 ~ 44960586 (-)
G262668 NA non-coding upstream 56962 44960631 ~ 44960857 (-)
G262989 NA non-coding upstream 96873 45000542 ~ 45001544 (-)
G263006 NA non-coding upstream 131130 45034799 ~ 45035035 (-)
G261580 NA other downstream 860903 43989524 ~ 44031505 (-)
G259576 LOC106599288 other downstream 2564413 42285630 ~ 42327995 (-)
G259579 LOC106586070 other downstream 2573023 42290259 ~ 42319385 (-)
col6a3 LOC106598405 other downstream 2577050 42291728 ~ 42329627 (-)
G259259 sdpr other downstream 3124820 41763817 ~ 41767588 (-)
G262993 NA other upstream 106503 45010172 ~ 45012249 (-)
G263274 NA other upstream 632663 45536332 ~ 45537542 (-)
G265988 NA other upstream 2695549 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 3128378 48032036 ~ 48033434 (-)

Expression


Co-expression Network