G263548


Basic Information

Item Value
gene id G263548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45834277 ~ 45836050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU299673
tttgaatggtactgtacatttaGCAAAGTGGTAACATGGGAAATTGGGTGAAAACAAACAGAAGACTGAGTTAAGTCTTTGGGTTCCATTTCATCAAATCTAAGGCAAATGGTAAATGTTAGCGCTGTCAATAGTGCTATATTCTTGGTATTTTCACAGCTGGAATTATGGCCGCAGTGGCgtgaaagggctgggttttgatgaataaataaGTTGTAGGTGGAGGCTtgacccctcactggccaatcagaacctgctccatggctaaataggtggttgcttcaagttgtgcATTTACGGACTTTTATGTATTGCGTTGTCATCAACGCTGATTTGAATGTTAGTTTGTTATAGCCTACTTTGTtacatagcctacagaaacaaaATATATGTAGGCTTGTCCCATATTTGCTAAATatgttgaacatgtttgcaaGGCACATTGTTCTAAGAAGTAATTGCACGGCTTCAATATGGAAATGCATTGTTGAACATAGCATTTTTCATTGATATATTGGCTAGGCcaactgtaaaatagcattaCGCCTGCCACGTCTCAATGATGGACATGCCAAACattgtcaataagcaagattaaAGTCACTACTGATACGGCTTAAAAAGCGAGTGAACGATTATAAAATCaaaacaacttgttttaaataggcCGTCTAAATATAGTTACAGCCACAATAACGGCTCCCTGCGAGGACATAATAAATGAGGCAATGTAGACGACAGAGGGTTTTACGCACTTCCAAAACTTTTCATAGGAGATCCAAACAAAGATCCAAATTCAATATAAAGAGGGGGTAATGTCCCCTCATCATTATAGGCTACACATCCACTCTACAGATAGCATTCGCACTTCTCCAGAAATAGCAGACAGCTCTTAAATTGCATTGCATGCGAGCCATGGACGTTCTCACCAGGAAGCCAAGGACGTTGAATCATCCTAATAAAACGTTTggtttttaattaaaaaatatatataaatacgaGGGTCACCGACCGGCACATTTCTTATGGACATATGTACATAGGAGGTTTAACGCATGTCCAAAATAATAATGGGAGCTGGCTGAAATAACTTATCCACTCACTGTTTTGCTGCTTCCAAATTTGATCTTTAAGTAAAGCTGTGGGTGATTAAGGTTTATTTCAAAGCAGTCTCGCTAGTCAATCCCTTTATTCATAGTCTGCTACCAAAAACAAACTGCCTtctgagggggaggggagactatgcttgttttttttaaatcaacttaaaaacaaaaaatgtcaaatgttttaggttACTAAATGCCAGGGTTACCAGCGCAAAATGCAAATTTCCCCTCTTGTTACAGGAGAGTATGTGCACTGTGCGTCACGGCTGAATAGGTTTGCGCTCCCGCCCTCAAAATCCATGTCATTACCATCCATGTTACCGCGAAGACCTGCTTTTCGTTGGTCTTAAAATCTCACCCTTTGTGCTCCATGAAATTTTCATTTTTGAAGACACGAGTCAGATATTGCTACCCCTCCCACCGCAGCGCAAGTGAGCCGATGTTAGACAGATAAATTGCCGAACCTCACGCATGCCGAAATGGCCAACTGACGTGCGTTTGACACTTGCGGCCTCCTTAGTGAAAGCTGGAAATAGAGCCCTGTGTATTATTTAGTAGTGACGGTTGAAAGCTGATAGAATTGTTTACTTGAACATGGATTTGGAAGCTTTCCTATCCATTTGGATGGAGTAAATGAATGTAGGGGAGATATGGGGTGCTTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299673 True 1774 lncRNA 0.40 1 45834277 45836050

Neighbor

gene id symbol gene type direction distance location
asic4a LOC106586149 coding upstream 10976 45726237 ~ 45823301 (+)
LOC110520030 gmpaa coding upstream 254274 45571650 ~ 45580003 (+)
pnkd pnkd coding upstream 272895 45549912 ~ 45561382 (+)
dars1 sydc coding upstream 294979 45509465 ~ 45539298 (+)
LOC110520024 cxcr4 coding upstream 332138 45500138 ~ 45502139 (+)
LOC110504149 wnt6 coding downstream 16132 45852182 ~ 45884194 (+)
LOC110520033 LOC106586153 coding downstream 67615 45903665 ~ 45933022 (+)
LOC110520034 LOC106586154 coding downstream 172149 46008199 ~ 46010647 (+)
LOC118957146 NA coding downstream 196715 46032765 ~ 46043845 (+)
LOC110520040 LOC106586160 coding downstream 505798 46341848 ~ 46441801 (+)
G263549 NA non-coding upstream 396 45833635 ~ 45833881 (+)
G263516 NA non-coding upstream 4005 45825683 ~ 45830272 (+)
G263453 NA non-coding upstream 144419 45689470 ~ 45689858 (+)
G263399 NA non-coding upstream 189883 45644193 ~ 45644394 (+)
G263376 NA non-coding upstream 209784 45624277 ~ 45624493 (+)
G263550 NA non-coding downstream 4484 45840534 ~ 45840763 (+)
G263552 NA non-coding downstream 6153 45842203 ~ 45842458 (+)
G263553 NA non-coding downstream 6804 45842854 ~ 45843067 (+)
G263554 LOC106586150 non-coding downstream 8354 45844404 ~ 45844841 (+)
G263680 NA non-coding downstream 52731 45888781 ~ 45889224 (+)
G262037 NA other upstream 1308869 44520419 ~ 44525408 (+)
G261749 NA other upstream 1581726 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 5382097 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 6166189 39658753 ~ 39668297 (+)
G254816 NA other upstream 6989721 38843510 ~ 38844556 (+)
G263547 LOC106586150 other downstream 2871 45838921 ~ 45839480 (+)
G263710 NA other downstream 98069 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 239434 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 348084 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 994958 46801058 ~ 46832288 (+)

Expression


Co-expression Network