G264371 (LOC106586154)


Basic Information

Item Value
gene id G264371
gene name LOC106586154
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46008328 ~ 46010622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU300546
AGCAATAACATACACTAGTGAACTGTCAATACTTGTCCATCGTCGCATTGTTTACATTACATTGTTTGTTTGAGAACAGCTCTCCAGAAATGAGTGCTATACCAGAGTTGTTCCTGATTGCTCTGAGcacataaaatcacattgtgCAAGTGAAAGCCAtgtatgataaaaaaaaaaacatatgcaAATGAGCCACAGTAACAGATCAGCTAACTGTGAACACGGTGGCTCATCAGATGTCGAAGAAAAGTCCATCTTCTGAACCAATCAGTAGGGGTAACAGTCCAGTTCCTTCAAGCACTAGCATCTGACCTTGACACTAAATAAGGTAAATGCTTTACTGTTAGTGAATGCTGCACTAGTTTAAATAAAACACAATTACATGATATTGCCAGGGCCTTCTTTCAGGCTCCAATGTTTCAATGCAGAGCACTGAGCCACAGAGAAACAGTAGATTGAAGAGATGCACCTACAAATGCTGAAAACAACCACCAGCCTTGACCAGTATCTATTGCACCATTACAAGTTCACAAATAGGGTAAATTACATTAATAAACcattgtaacttatttttttgtgTCACTTCAACAAGTACATCAACAAAATGGcaacaattattttttaaattaaaatatactttttttcaaATGGAAACAATCTGCTATAATAGTTAAAAATAAATATGATGTAAACCACAGTGTTTAATATTGTGATAATTGGCACAAATTATGCTAAAGAATCCCTTTCCTTGTGCATTCCCGTCTATGTCCTAAGTGCTAGCATAGGTTTACGATGCGTAAAGGCTACGCCAGTACCTTGGATAGCTCCACCTCTCGACGCATAACATACTGCTATTCTTTTGCCCACAACAAAACTCCATAAGTGAACATCAAGGCAATTATAAAAGTCGTCCATATTACCCACACATTTATGTATTTGCAGATTTTCCATTGATCCACGGAGGCCCTGTGACTATCCTACAGTATTCGCAGAAGGGTACAAAAAGGAGATTGGTCTACATTTAGAATACAACATGCATATACTGAGCCGTGGTTACGCAATACAATTAGTTTTAAACTGTTGAATAGTACATTCAAACCACTATGTCAGGGGTTTTGTGAAACATACATCGGAGCCCTCATTTGATTTAACGGTCCAAGTCTTTGTCCCTCGACTCGCCTTCATCTTTTAGCTCTTGAAACACCTCCGTGAAAAAGTGCGGGTCTGCATTTAACTGCAACATTTTGGCACTCGTGTTATTGATGATGCTCATAGAACAATCCCAGAAATGATCCTCATTTTCCATAATCATGAATGGTTTCAGAGGGTATGATATCTCGCAACCCATGTACGAGTaggatagatagagacagagcaggaagaTACCGTGGAGTTCAGATGCGCTGTCGATATCATCGGGTATCGATTCCTTACAGAGCAGGTAGACGAAGACTAAGTTGGCAGGTGTAATGAATCCCTGGTCCTGCCAGCCTTGGAGGAGAAGGGTTCGGTCGACATTTCGGAACCATAGGATGACCTCATTGTAGGTGAGCTTGACTTTACAGCATCTCCTGCACACAAATTCGCCAAGACAGCGCAACAGCTCCCCGGTCGATGCCTGGATAATCACACGCCTCGGCGAGAGGTCTACTTTACTAGGTTGCTTTTGGTCAGGCGAAAGCTTCACATTCTCAGAGGGAACCTGGGGCTGGTTAGGTTCAAGGCTCTGGGTAGGAACCACCGGCACTGGTACAGCAAGTGGTGCTTTCTTACCATCCGTACTCGATTGCTGGgattttttgttattttcattATTTTGCTGGTCTACGTGGCTGTTGTTGTTCACCTGTGCGGCGTTCGGGTTGACTTTCTTACAACTATTTCTCTTGGTCGATGTGGTAAACAGTTTCTTCAATGTGAGAACTGGGACAAGCATGGAATTGTTCTTTACGCTCCCCGTTTTGATTGCGTGGTCACCCTCTTTTCTGTCATCCAGAATAGCCTCCTTCTTCGATGTTGGAGATATGGAGAGCACCGTTCCCATTCTTGCAGCGTAGGCTACGGCCTGGAGAGACGGCGTTCCTCGTTTGCGGACGGCGTTCCTCGCTTGCGGAGAAGTCGTTCTAGACGACGGCGGTCAAATCAGAGCAGCAAATTTAATTCCATTGACTATGCGGGTCCATTGCGTTGACAGATGGAAATAGTTTCTCATAGGAATTGAGTGGATATTGATGAGTGAAATTCCAGGAGGCAATGGTCGACTCTCACACGACACTGCCTCTGCAGCGCACTACC

Function

NR:

description
cyclin-dependent kinase 5 activator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300546 True 2295 lncRNA 0.43 1 46008328 46010622

Neighbor

gene id symbol gene type direction distance location
LOC110520032 LOC106586150 coding downstream 163284 45830930 ~ 45845044 (-)
si:ch1073-416j23.1 LOC106586148 coding downstream 420657 45580103 ~ 45587671 (-)
LOC110520026 tmbi1 coding downstream 441282 45539844 ~ 45567046 (-)
LOC110520023 LOC106586145 coding downstream 545560 45434956 ~ 45462768 (-)
LOC110520020 LOC106586142 coding downstream 575470 45400285 ~ 45432858 (-)
LOC110520035 LOC106586155 coding upstream 10348 46020970 ~ 46024407 (-)
LOC110520036 LOC106586156 coding upstream 20860 46031482 ~ 46034427 (-)
LOC110520037 pyr5 coding upstream 33318 46043940 ~ 46047859 (-)
LOC110504150 LOC106586158 coding upstream 67439 46078061 ~ 46335208 (-)
LOC110520042 LOC106586165 coding upstream 536215 46546837 ~ 46599080 (-)
G264374 NA non-coding downstream 2296 46005751 ~ 46006032 (-)
G264372 NA non-coding downstream 4620 46002939 ~ 46003708 (-)
G264367 NA non-coding downstream 12447 45995617 ~ 45995881 (-)
G264356 NA non-coding downstream 17758 45990327 ~ 45990570 (-)
G264354 NA non-coding downstream 19221 45988725 ~ 45989107 (-)
G264361 NA non-coding upstream 37502 46048124 ~ 46055954 (-)
G264390 NA non-coding upstream 48856 46059478 ~ 46059722 (-)
G264396 NA non-coding upstream 57279 46067901 ~ 46068102 (-)
G264398 NA non-coding upstream 58964 46069586 ~ 46069807 (-)
G264400 NA non-coding upstream 60912 46071534 ~ 46071818 (-)
G263274 NA other downstream 470786 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 904065 45099333 ~ 45104286 (-)
G262993 NA other downstream 996079 45010172 ~ 45012249 (-)
G261580 NA other downstream 1976823 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 3692970 42291728 ~ 42329627 (-)
G265988 NA other upstream 1588596 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 2021425 48032036 ~ 48033434 (-)
G268310 NA other upstream 3484855 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 3491794 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3553226 49563841 ~ 49608114 (-)

Expression


Co-expression Network