G264657 (LOC106586160)


Basic Information

Item Value
gene id G264657
gene name LOC106586160
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46434462 ~ 46437565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU300841
TTGGAAGCTCAGGGTACGCTAACAGACAACAGTGATTTTTGCAGCGCCTCTTACAGTGGAACTTTAGCCAAACTCATAGTGCACTGTATCTAGCACATTTTCTCAATCTCAAACCTGTTTGGGTGGATTAATACGTTACGACACCGCTCCAACAGTGCTCGTCTCGTGGTTAAGACGGATGGCCATATGTTGATCTGTAACCGGAGACATGGTCTGCAtccccaaatgtcaccctattctatagtgcactacttttgaccgaggctcatagggtgccatttgggacacagtacaCGATCTGGTTCTGCTGTTACCTACCTGCCATTTCCTTCTCAAGATGTACTTCTTCATCCTCTCCTTGGACAGCTTCTTGGCCTCCATTTTGCCAGTGTCTTGTTTTAGCCACGGGTGCTCATAGCACTGATCGCATGTCAGCCTAGCCTTCATATCTTTCTTCAGCAAGTTTGTAATGAAGTCCTTGGCGTGGTCTGAGATCTCATCGAAGGCGTCGTCTTCAAAGTCCCAAGTGGCCGAGGTCACATTGGAAAGGGTCTCGTTGTCGTTATCCCCCATGAATGGGGACAGGCCACTCACCAGGATGTAGCAGATGACCCCTATACTCCACATGTCTGTTGGGTAACTGATTGCTTCATAGTTGATCACTTCAGGGGCCACAAACTCAGGGGTTCCAAACAGAACTTTCAATGTTCCAGAGCTTTAGTCTGCGAGCGAGGCCGAAGTCAATGAGTTTGATGGTGTTCCCGGTCTTGTTGACACACATGATATTCTCAGGCTTCAGGTCCAGATGGACGATGCCCTGCTTGTGGATGTAGTGAACCCCGTCCACAATCTGCAGCATGTACTTAATGACCTCCCTTTCTGTCAGCTCAAAGTCTTCATCGATGATACGCTCAAACAGCTCCCCACCAG

Function

NR:

description
myosin light chain kinase, smooth muscle-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300841 True 930 lncRNA 0.48 4 46434462 46437565

Neighbor

gene id symbol gene type direction distance location
LOC110504150 LOC106586158 coding downstream 99254 46078061 ~ 46335208 (-)
LOC110520037 pyr5 coding downstream 386603 46043940 ~ 46047859 (-)
LOC110520036 LOC106586156 coding downstream 400035 46031482 ~ 46034427 (-)
LOC110520035 LOC106586155 coding downstream 410055 46020970 ~ 46024407 (-)
LOC110520032 LOC106586150 coding downstream 589418 45830930 ~ 45845044 (-)
LOC110520042 LOC106586165 coding upstream 109272 46546837 ~ 46599080 (-)
rprma rprm coding upstream 281118 46718683 ~ 46721823 (-)
LOC110520047 LOC106586168 coding upstream 564242 47001807 ~ 47007117 (-)
LOC110520049 LOC106586170 coding upstream 700801 47138366 ~ 47145477 (-)
LOC110520051 LOC106586171 coding upstream 710779 47148341 ~ 47177648 (-)
G264583 NA non-coding downstream 104472 46329741 ~ 46329990 (-)
G264582 NA non-coding downstream 105017 46329202 ~ 46329445 (-)
G264576 NA non-coding downstream 112161 46322102 ~ 46322301 (-)
G264571 NA non-coding downstream 117228 46316978 ~ 46317234 (-)
G264570 NA non-coding downstream 117608 46316518 ~ 46316854 (-)
G264714 NA non-coding upstream 106768 46544333 ~ 46554699 (-)
G264758 NA non-coding upstream 224774 46662339 ~ 46662639 (-)
G264763 NA non-coding upstream 233821 46671386 ~ 46671623 (-)
G264793 NA non-coding upstream 315669 46753234 ~ 46753710 (-)
G264883 NA non-coding upstream 395546 46833111 ~ 46833339 (-)
G263274 NA other downstream 896920 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 1330199 45099333 ~ 45104286 (-)
G262993 NA other downstream 1422213 45010172 ~ 45012249 (-)
G261580 NA other downstream 2402957 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 4119104 42291728 ~ 42329627 (-)
G265988 NA other upstream 1161653 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 1594482 48032036 ~ 48033434 (-)
G268310 NA other upstream 3057912 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 3064851 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3126283 49563841 ~ 49608114 (-)

Expression


Co-expression Network