G264714


Basic Information

Item Value
gene id G264714
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46544333 ~ 46554699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU300900
tcaaccagcttcatgagatagtcacctggaatgcatttcaattaacaggtgtaccttgttaatttgttgaatttctttccatcttaatgtgtttcagccaatcagctgtgctgtgacaaggtaggggtggtatacagaagatggccctatttggtaaaagatcaagtccatattatggcaagaacagttcaaataagcaaagaaaaacaacagtccaccattactttaagacaggaaggtgctatgatgaaactggatctcatgaggaccgccacaggaaaggaagaccaggagttacctctgctgcagaggataagttcattagagttaccagcctcaaaaattgcagcccaaataaatgcttcacagagttcaagtaacacacacatctcaacatcaactgttcagaggagactgtgtgaatcaggtctcCATGGTCAAACTGCTGCAgaaggagacttgcttgggccaagaaacacaagcaaaggacattagaccggtggaaatctatcctttggaCTGATAAGTTAACATTTtggaattttggttccaaccgccgtgtctttgtgagatgcagagtaagtgaacggatgatctcagcatgtgtggttcccaccgtgaagcatggaggaggtgtgatggattggggatgctttgctggtgacactgtctgtgatttatttagaattcaaggcacacttaaccagcatggcttccataGCGTTCTGCAGCGATTCACCATTCCCATCtcgtttgtgcttagtgggactatcaattggttttcaacaggacaatgacccaaaacacacctccaggctgtgtaagggctatttgaccaaggaaagtgatggagtgttgcatcagatgacctggcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggaccgcagtgatggaaaagcagccaagtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctgaagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtgtctactttgaagaatatatt

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300900 True 1076 lncRNA 0.44 2 46544333 46554699

Neighbor

gene id symbol gene type direction distance location
LOC110504150 LOC106586158 coding downstream 209125 46078061 ~ 46335208 (-)
LOC110520037 pyr5 coding downstream 496474 46043940 ~ 46047859 (-)
LOC110520036 LOC106586156 coding downstream 509906 46031482 ~ 46034427 (-)
LOC110520035 LOC106586155 coding downstream 519926 46020970 ~ 46024407 (-)
LOC110520032 LOC106586150 coding downstream 699289 45830930 ~ 45845044 (-)
rprma rprm coding upstream 163984 46718683 ~ 46721823 (-)
LOC110520047 LOC106586168 coding upstream 447108 47001807 ~ 47007117 (-)
LOC110520049 LOC106586170 coding upstream 583667 47138366 ~ 47145477 (-)
LOC110520051 LOC106586171 coding upstream 593645 47148341 ~ 47177648 (-)
LOC110520052 LOC106586172 coding upstream 633783 47188482 ~ 47228663 (-)
G264657 LOC106586160 non-coding downstream 106768 46434462 ~ 46437565 (-)
G264583 NA non-coding downstream 214343 46329741 ~ 46329990 (-)
G264582 NA non-coding downstream 214888 46329202 ~ 46329445 (-)
G264576 NA non-coding downstream 222032 46322102 ~ 46322301 (-)
G264571 NA non-coding downstream 227099 46316978 ~ 46317234 (-)
G264758 NA non-coding upstream 107640 46662339 ~ 46662639 (-)
G264763 NA non-coding upstream 116687 46671386 ~ 46671623 (-)
G264793 NA non-coding upstream 198535 46753234 ~ 46753710 (-)
G264883 NA non-coding upstream 278412 46833111 ~ 46833339 (-)
G264935 NA non-coding upstream 361129 46915828 ~ 46916800 (-)
G263274 NA other downstream 1006791 45536332 ~ 45537542 (-)
LOC110520012 cssa21h2orf88 other downstream 1440070 45099333 ~ 45104286 (-)
G262993 NA other downstream 1532084 45010172 ~ 45012249 (-)
G261580 NA other downstream 2512828 43989524 ~ 44031505 (-)
col6a3 LOC106598405 other downstream 4228975 42291728 ~ 42329627 (-)
G265988 NA other upstream 1044519 47599218 ~ 47599815 (-)
LOC110505248 gcg other upstream 1477348 48032036 ~ 48033434 (-)
G268310 NA other upstream 2940778 49495477 ~ 49495803 (-)
LOC118944672 NA other upstream 2947717 49494001 ~ 49503025 (-)
LOC110520112 LOC106586230 other upstream 3009149 49563841 ~ 49608114 (-)

Expression


Co-expression Network