G268350


Basic Information

Item Value
gene id G268350
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49555919 ~ 49557529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU304892
atttattctgtttttattgcaatttgtcacaaaacacagtaTTCAAAACATCTGACTAGAGGAATGAATGACGAGCCAGTGATgagacttacattttttttttcttcaaagcaTGTTTTAGGTAGGCCTAGTACAAAATAGGCCTTTTCACACTGCATTGTTCTTAGCCCCAGGCTAGACTGGCCCTGGGCTAGCTTAGTCGGTGTTCACACAAACATTTGTTAACCCTGAGCTAAGGTGCAGTGTGAAAGCACCTAATGCTTCTCATTGATCACCATTCCACAGCAATTACCCTTTGAATAGCTTCCGTATCAAATGAAGTCTGTTAGGCCTACAGACAGCATTCATCAAGAAGATCACTTTCCGAAGTCGGCATTTTGGGGGTTTGTATTATGATTCTTATGTCAGGTGGCATCTCAACCTTCAAGACACACATAACAAATACCATTACTGAGTGCCTTCCTTCTTACTCAGGAATGCTCAAATAAAATTAGCGAAACAATAAACTGCATTTTACTGCTTCTTTCAAGCTCCAGTTTTCCCAGCTGCATGCTACTGAAGTATCACCCAGTACAGTATTTGCGTATATGAAATGGCTTTGACAGGGGCACTGTATTGGATAAACAGAGGTTTGGTGGGAATCAGTTAAATATCTCAAACTCATAACTGACATAACTGTCTTAGAAATATTCATAAAGGTGCTATTCTTTTCTAATTCGGGAATTGAGAGGCATTGCATAAACTTTGTACCTGTTTGACTTGTGTAGAAATGACATACCTTTTTTTGAATAATCAAAGTGCAAAGAATGAGTCCCAATTACAATATTATTCACATAATACCTGTAGCTACTTTTAAGTCTGTGCAGCACTAGAAAATCAGCAGTACCATTTACCCTTACTTATTATACTGAAAAGTAACttgggataaaaaaaaatgtaaaaagactTTGGCCAATgcatatctgttttttttttatacagataatgacaaaaataaatatacagtgtGCTAAAGTATTTAAATATatacaaaacatacagaatgttCCAGTCAATTCATTGCAGGGATTATACAATATGGAGATTGGATAAAACTGACTGCAAAAGAACACAGCAGAAAGATTATCTACAGCTAAACATTGGAGATTGAAACTCAATTCATCATGTCATTAAAAAAATTTATCAGTGGCAGATAATGGATTTCAAAGTCCCAATTTCCTTTTTCTACCCAAATGTAAGACGCGATGCTTCTAATTTCCTCAGATGCAACACAGGATAGATTTCCATCTGAGAGTCCTTGGGGAGAATAGAAAACGTTTATTTTGTAGTTTGCTTCCCAAAATGCAGTCATTGGATGTTTAGAAAAATAGGATATTGTATCTGACCGTATCCCAACAGTCAAGTGTCTCATGAGTAGCTCTCGTTCTCATTCCAGCTTGTCATCCACTGCTTTTTCTCAAAGGAATCCAGCTTGGCTTTTCCGTCTTTAAACTGACAAGCCTCCTTCTTGATCCGTACGGCATGGTATCTTGGAACGCTGTCATCATGCTTTGAGCGTTTGAAAAATCCACACTGGCAAGagaaaatatacagtggggcacaaaagtattt
>TU304893
atttattctgtttttattgcaatttgtcacaaaacacagtaTTCAAAACATCTGACTAGAGGAATGAATGACGAGCCAGTGATgagacttacattttttttttcttcaaagcaTGTTTTAGGTAGGCCTAGTACAAAATAGGCCTTTTCACACTGCATTGTTCTTAGCCCCAGGCTAGACTGGCCCTGGGCTAGCTTAGTCGGTGTTCACACAAACATTTGTTAACCCTGAGCTAAGGTGCAGTGTGAAAGCACCTAATGCTTCTCATTGATCACCATTCCACAGCAATTACCCTTTGAATAGCTTCCGTATCAAATGAAGTCTGTTAGGCCTACAGACAGCATTCATCAAGAAGATCACTTTCCGAAGTCGGCATTTTGGGGGTTTGTATTATGATTCTTATGTCAGGTGGCATCTCAACCTTCAAGACACACATAACAAATACCATTACTGAGTGCCTTCCTTCTTACTCAGGAATGCTCAAATAAAATTAGCGAAACAATAAACTGCATTTTACTGCTTCTTTCAAGCTCCAGTTTTCCCAGCTGCATGCTACTGAAGTATCACCCAGTACAGTATTTGCGTATATGAAATGGCTTTGACAGGGGCACTGTATTGGATAAACAGAGGTTTGGTGGGAATCAGTTAAATATCTCAAACTCATAACTGACATAACTGTCTTAGAAATATTCATAAAGGTGCTATTCTTTTCTAATTCGGGAATTGAGAGGCATTGCATAAACTTTGTACCTGTTTGACTTGTGTAGAAATGACATACCTTTTTTTGAATAATCAAAGTGCAAAGAATGAGTCCCAATTACAATATTATTCACATAATACCTGTAGCTACTTTTAAGTCTGTGCAGCACTAGAAAATCAGCAGTACCATTTACCCTTACTTATTATACTGAAAAGTAACttgggataaaaaaaaatgtaaaaagactTTGGCCAATgcatatctgttttttttttatacagataatgacaaaaataaatatacagtgtGCTAAAGTATTTAAATATatacaaaacatacagaatgttCCAGTCAATTCATTGCAGGGATTATACAATATGGAGATTGGATAAAACTGACTGCAAAAGAACACAGCAGAAAGATTATCTACAGCTAAACATTGGAGATTGAAACTCAATTCATCATGTCATTAAAAAAATTTATCAGTGGCAGATAATGGATTTCAAAGTCCCAATTTCCTTTTTCTACCCAAATGTAAGACGCGATGCTTCTAATTTCCTCAGATGCAACACAGGATAGATTTCCATCTGAGAGTCCTTGGGGAGAATAGAAAACGTTTATTTTGTAGTTTGCTTCCCAAAATGCAGTCATTGGATGTTTAGAAAAATAGGATATTGTATCTGACCGTATCCCAACAGTCAAGTGTCTCATGAGTAGCTCTCGTTCTCATTCCAGCTTGTCATCCACTGCTTTTTCTCAAAGGAATCCAGCTTGGCTTTTCCGTCTTTAAACTGACAAGCCTCCTTCTTGATCCGTACGGCATGGTATCTTGGAACGCTGTCATCATGCTTTGAGCGTTTGA

Function

NR:

description
integrin alpha-6-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU304892 False 1611 lncRNA 0.37 1 49555919 49557529
TU304893 True 1562 lncRNA 0.37 1 49555968 49557529

Neighbor

gene id symbol gene type direction distance location
LOC118944672 NA coding downstream 52894 49494001 ~ 49503025 (-)
dlx2a dlx2 coding downstream 77802 49475978 ~ 49478117 (-)
LOC110520101 LOC106586223 coding downstream 142806 49390493 ~ 49413113 (-)
LOC110520100 LOC106586220 coding downstream 198471 49303033 ~ 49357448 (-)
ccdc173 ccdc173 coding downstream 480749 49055465 ~ 49075170 (-)
LOC110520112 LOC106586230 coding upstream 6312 49563841 ~ 49608114 (-)
sp3a LOC106586237 coding upstream 237128 49794657 ~ 49802027 (-)
LOC110520118 LOC106586238 coding upstream 257242 49814771 ~ 49862076 (-)
LOC110520119 NA coding upstream 309658 49867187 ~ 49871681 (-)
LOC110520120 LOC106586242 coding upstream 321581 49879110 ~ 49895110 (-)
G268346 NA non-coding downstream 5979 49549681 ~ 49549940 (-)
G268332 NA non-coding downstream 25455 49530231 ~ 49530464 (-)
G268330 NA non-coding downstream 27673 49527933 ~ 49528246 (-)
G268329 NA non-coding downstream 29743 49525950 ~ 49526176 (-)
G268328 NA non-coding downstream 30214 49525422 ~ 49525705 (-)
G268351 NA non-coding upstream 655 49558184 ~ 49558433 (-)
G268358 pdk1 non-coding upstream 3823 49561352 ~ 49561761 (-)
G268382 NA non-coding upstream 53301 49610830 ~ 49611085 (-)
G268428 LOC106586235 non-coding upstream 121478 49679007 ~ 49709073 (-)
G268458 LOC106586235 non-coding upstream 168625 49726154 ~ 49727656 (-)
G268310 NA other downstream 60116 49495477 ~ 49495803 (-)
LOC110505248 gcg other downstream 1522617 48032036 ~ 48033434 (-)
G265988 NA other downstream 1956104 47599218 ~ 47599815 (-)
G263274 NA other downstream 4018377 45536332 ~ 45537542 (-)
LOC110520121 LOC106581751 other upstream 342644 49895327 ~ 49901575 (-)
LOC110520139 LOC106586251 other upstream 882676 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1570911 51126600 ~ 51130404 (-)

Expression


Co-expression Network