G267385


Basic Information

Item Value
gene id G267385
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49563888 ~ 49565192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU303807
CATTCATGTTGACAAGACAGCAAGCTATTCAACAGATTTACTgtcataggcacacacacacctcgtgtTCTCATGGACCCCACACCCTGTCAGCAAGGAGTGCATgcactgtagaataatattgCATGTCTTGGTACCATTTCAGCAACACGTCAAATTCTCCGGCTCAATAGGACCACGGAGTAGTACATCCATTCTCAAAACAGGCACAGTTGGGAACGGGTTATATATAAACAGCATTTACGTTGTTGTTACTTGATTCTTTTGCCTTTAGCAGAGATGTTTTCATCCTAGTGGCTATTCTACTTAGTAGAAAAAGTATTATAAATGATGGAACCTTTAATAATTTGATTTTAAAAAGTTATGCAGTTACTTGATATGTAGAAAAGTTAATTTATACACCTAAAACCTTGTCACCCTTAAGCTTAATAGTACTTTTATCTCAACTGTACAAAGTTCCTGCAACAAAATATCTGTACATGGCTACAGGAAAGTTACGCTAGCAAAAATACACTATAAAACATGTAAAAAGTAGTACTGAACTCATTCCACTTGTTGTATGGGTAAATGTACACAAATCCTGCAACTACATATCTGGAAACTCAAAAAGAGATAAAATTACTGCTTCTATAGATttataaaggtaaaaaaaaaacatgttgggTTTTGCCTTTGGTCATGTCCCCAACACTTGTCATTACAGTATCACTTTCactttcaaccccccccccccccccccccccccaaatctacCACAATGATGTGACAACAGATACTGCTGGCGACAGGACTGTCAGCgtgtttgatttgattataaAGCAGAGCCAGCTCGTGTGTTCTTGTGAATAACCCAAAACTAGGAAACTAGGAAAAGTATCAATAGCCACAAATCGGGCTATTTTCAGATGATTCTTCCAATTGGCATGGTAAATCAACACTGGGTGTGCTGTCATTATAAACTCACATGATGAGTGACTGCTTTAGGGCTCTCTTAGTAACTGCGGGGAACTGAGGTGGATGGCACTTACGTAGACCTCTGGGGCAGTTCAGCAGACAGAGTCAGTGATGGGAGGCAGTCTCCCGCTGCGCCGTGATTCcttctcccttttctccctctgtttctccatcttctCCTGGGCCTTCCTCATGTCCTTCAGCTTCTTCTTGATGGTGGCCCGGTCACTTTGGCTGGACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303807 True 1197 lncRNA 0.42 2 49563888 49565192

Neighbor

gene id symbol gene type direction distance location
pdk1 pdk1 coding upstream 51 49560085 ~ 49563837 (+)
itga6a LOC106586229 coding upstream 6351 49529978 ~ 49557537 (+)
dlx1a dlx1 coding upstream 93142 49464651 ~ 49470746 (+)
hat1 hat1 coding upstream 133806 49413492 ~ 49430082 (+)
dync1i2a LOC106586225 coding upstream 173293 49368762 ~ 49390595 (+)
LOC110520113 LOC106586233 coding downstream 64054 49629246 ~ 49676777 (+)
zak LOC106586235 coding downstream 111737 49676929 ~ 49731937 (+)
cdca7a LOC106586236 coding downstream 166684 49731876 ~ 49735462 (+)
LOC118959582 NA coding downstream 192625 49757817 ~ 49767356 (+)
LOC110520117 LOC106586239 coding downstream 297047 49862239 ~ 49865998 (+)
G267380 NA non-coding upstream 9543 49553946 ~ 49554345 (+)
G267377 NA non-coding upstream 23554 49539848 ~ 49540334 (+)
G267375 NA non-coding upstream 24609 49538890 ~ 49539279 (+)
G267374 NA non-coding upstream 25941 49537493 ~ 49537947 (+)
G267416 NA non-coding downstream 45883 49611075 ~ 49611419 (+)
G267427 NA non-coding downstream 49392 49614584 ~ 49614845 (+)
G267471 NA non-coding downstream 179281 49744473 ~ 49747702 (+)
G267503 NA non-coding downstream 226563 49791755 ~ 49794631 (+)
G267546 NA non-coding downstream 296184 49861376 ~ 49861654 (+)
G267381 NA other upstream 8050 49554498 ~ 49555838 (+)
G267358 NA other upstream 51413 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 2731644 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3379084 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3484463 46075484 ~ 46079425 (+)
G267529 NA other downstream 271425 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 597109 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 1037110 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 1333397 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 2008788 51573980 ~ 51582567 (+)

Expression


Co-expression Network