G268458 (LOC106586235)


Basic Information

Item Value
gene id G268458
gene name LOC106586235
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49726154 ~ 49727656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305019
CTTGAAGGCAAAGCAAGCTCAGTGAAACAGTGGTCAGTGTTTGCTTGAGTTTGATGGGGAACATATGGGCATCTTTACCTAGAGAAACAGCATCTTGAAGATGAGCATTTCCATCTTGGCATACCAGTTTCAATCTTATCTGACAACAAGTTTGCTATGACTATAGGCATTTGAACCAAACCAGAACTGAGACTAAATTATTTTACAGATACATttgaaaatgcaaaaaaaaagtaCCAAGACATCTTGGTTATTTGTCATATAATATTTTCAGTGTCCATTGAAAACCTACCGAGTGACCTGTTCCTGCTTTCCAGTGGTACCCAAACACCAGCTCCAGATTAAcaatcttcctcctctcctcctcctcctcctcctctgcccacGCATCCTTCATTAGTGGAGGGAAGTGGAAGAGCCCAATGTAGTCATTGGTTAGCTTCTCAATTTCACTCTTGAGGTGCATGATGTGACCTTTGGACCTGACCCCCAGGTCTCGCATGTCTGTTTCcgtgagcagcagcagcctcttGCCAGTGATGTGGTTTTCCTTAAACAGGTCACCATACAGCTGCATGCCATATGCCCCCTCTGCTGAGAACACAGGGAAAACAAATGCAAATGAAAACGCATACACGCCAAAACGATGGGTTTCTTCATTTGAACATACCTACAGCATAATATGGTGACTTTGAACATACCCGCCCCAAATATCTGCTGCATCCAAAAGTACTGTGGGGATGGAATTGGAAAAGCATTACTATTCATAGTCAATGGAGGCATAAATGGTTATTAAAATGGTCAAGTAAACTAAATAAGTCATCGATTGATACGTGTTGATACTGACCACATGTTCCTCTGTCCAGGAATGAATATGAAGGTTGGGAAGGAGCTGtgtaaaagaagaagaagaagaatgagacaaAACTGAATTAGCACTAGGGAATACTGCTCTAAATGGTCACGTAGTACAAATGTGCACAGCTCAAAAGAAACAAATGCTGCCTATTCTTTACGTTTGGACTCTGACACAGATTTCGCATTCATGCGTGCAAGTAAATCATTATGAACATCGgtgcattacatacagtatacattacATACAGGCTTACTTCATTCCAAGACATGTTTACCATGTCTTATAGCAATGTTTTTTTGCAGCTAGTGTTCTGCAATCAAGATGACTGGGTCCTGAATGTCTATATCAAACTAAAATGTGTCCAATGCCCATCTGACTGGTCTTTCATGATGCATTTTAAAGATAAATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305019 True 1269 lncRNA 0.41 3 49726154 49727656

Neighbor

gene id symbol gene type direction distance location
LOC110520112 LOC106586230 coding downstream 118040 49563841 ~ 49608114 (-)
LOC118944672 NA coding downstream 223129 49494001 ~ 49503025 (-)
dlx2a dlx2 coding downstream 248037 49475978 ~ 49478117 (-)
LOC110520101 LOC106586223 coding downstream 313041 49390493 ~ 49413113 (-)
LOC110520100 LOC106586220 coding downstream 368706 49303033 ~ 49357448 (-)
sp3a LOC106586237 coding upstream 67001 49794657 ~ 49802027 (-)
LOC110520118 LOC106586238 coding upstream 87115 49814771 ~ 49862076 (-)
LOC110520119 NA coding upstream 139531 49867187 ~ 49871681 (-)
LOC110520120 LOC106586242 coding upstream 151454 49879110 ~ 49895110 (-)
LOC110520121 LOC106581751 coding upstream 167671 49895327 ~ 49901575 (-)
G268428 LOC106586235 non-coding downstream 17081 49679007 ~ 49709073 (-)
G268382 NA non-coding downstream 115069 49610830 ~ 49611085 (-)
G268358 pdk1 non-coding downstream 164393 49561352 ~ 49561761 (-)
G268351 NA non-coding downstream 167721 49558184 ~ 49558433 (-)
G268350 NA non-coding downstream 168625 49555919 ~ 49557529 (-)
G268459 NA non-coding upstream 81 49727737 ~ 49728138 (-)
G268457 NA non-coding upstream 3293 49730949 ~ 49731347 (-)
G268462 NA non-coding upstream 10566 49738222 ~ 49738450 (-)
G268467 NA non-coding upstream 64092 49791748 ~ 49794617 (-)
G268501 NA non-coding upstream 77321 49804977 ~ 49805179 (-)
G268310 NA other downstream 230351 49495477 ~ 49495803 (-)
LOC110505248 gcg other downstream 1692852 48032036 ~ 48033434 (-)
G265988 NA other downstream 2126339 47599218 ~ 47599815 (-)
LOC110520139 LOC106586251 other upstream 712549 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1400784 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1745668 51471899 ~ 51478510 (-)

Expression


Co-expression Network