G268467


Basic Information

Item Value
gene id G268467
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49791748 ~ 49794617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305031
caagaaagtgtaaaacaaaacaaatatatattttatatttgagattcatcggagtagccaccctttgccttgatgacagctttgcattctctcaaccagcttcatggggtagtcatctggaatgcatttcaattaacaggtgtgcgctgttaagtttatttgtggaatttctttccttaatacatttgagccaatcagttgtgttttgacaaggtagggttggtatacagaatatagccctatttggtaaaagaccaagtcaatattatggcaagaacagctcaaataaacaaagagaaatgacactaggtcatcatcattactttaagacatgaaggtcagtcaatgcggaacatttcaagaactttgaaagtttttttaagtgcagtcgcaaaaactatgcttcacagagttcaagtaacagacacatctcagcacatcaactgttcagaggagactgtgaatcaggccttcatggttgaattgctgcaaagaaaccactgctaaaggacaccaataagaagaagagacttgcttgggccaggaaacacgatcaatggacattagaccggtggaaatctgtcctttggtctgatgagtccaaattggagatttggagacgcagagtaggtgaacagatgatctctgcatgtgtggttcacaccgtgaagcatggaggaggtggtgtgaaggtgtgggagtgctttgctggtgacactgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatatgccatcctttttggtttgagcttagtgggactatcatttgtttttgaacaggacaatgacccaacacacctccagtctgtggaagggctacttgaccaagaaggagagtgatagagcgctgcatcagatggcctggcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggactgtagagtgagggaaaagcagccaacaagtgctcggcgtatgtgggaactgcttcaagactgttggaaaagcattcctcatgaagctggttgagagaatgccaagagtgtgcaatgctgtcatcaaggcaaagggtggatctTTGAAGAATCTATATTTTGATTTTACACTTTTTGCATACTACATGatttaatgtgttatttcatagttgtgatatcttcactatattgttaaatagtaaaataaagaaaaaccctttaatgtgtaggtgtgtccaaacttttgactctaTATGTATGTCTGTAAGCAGTCTTTTTACTGGGGTGGGGGTGCAAAGAAAAGCGTTAAATGTGGTTCCAATACATACGCACTGAAATGCCTTATTTTCTATCATATTGTGGAGTTGAAAAGGGGGGAACGGTGCATAGTTATTAAGCTACTGTCGATTGTTTAAAGGTTTGAGTTAAATGTGTGTTAAAAAAAATGGCATAGAAATGAAGCGATTGGCTATTGCCAGCCTAAAACCCTTGTTACGTTTTTTTGATGACAGCCATGGATAGGTCTGTGTCaaaatcctttaaaaaaaaaaacattagtaCGGTCTTCCTGATTTATGTTTGTGTCATATTTGTGCTTGCCTAAAACCATCAGCAAGCTTTACCCACATCCCGCTCCGTTGCATCCTGAATAATATCGCAGATGGCAAAAAGAAAACAATGGCATATTTAAAATGTTGTATAATAATTTCTATTGAACTTCTACAATTGATCGGATGTTGTAATATGCATTTCTTGCAAATCAAGTATTTTTAATGAACAGCTATATCATCGTAAACTGGTTTTATGGTATCTCAAACTCCAAGCTCTTTAAATGGCTTTTTaaatgtgtatagtgtaatatTCAGATGTGTTTATTTTGTAAAAACGTGATTTCTAAATGACTCACAATTTAGAAAGTCGAGTCATttttagaaagaaaaaaaaaagaagccatGCTAAGGGGTTGAATTGCCAAATTTGACTTTAATCTCAGGGTGACTTGGTCATGCACGGTAGAACAATCCTCCCCTGTAGCCCCTAGAGATGTTGTGGGGTGTTGTGTAGAGAGGTGTTATTCGATGGACCAAAAGCATAGTTGGAATTATGCTGTCACCGTGTTACCTATGCTCTATAAACTGTATGTCAGGGTCCTTAGATGACAACCCCCACCCCCCTTACCTTTATGAAATAGTTCGGTAAAGAGATGCGCTCTGTGTCTGCGCCTTGCTCAATCAGCCCTCTAAGACAGAAGTGAAGTGGTATCGCACGAGGCAGTACTCTCTTAATAGCACTCTTCTCTTCATCTGTAGTTTGATCATTCCCTTTTTGTTTAAACGTATTTGTATACTGCCCATGATGGTTATCCTCGTTTATTTTTTGTCAgtaaatgtttctgtctctgtcttattTCTTTTAATCGGAGTGTTATTTTGACTCCCTTTTCTGTAGTAATATATCTATGTTATTATTCAGATTATGAAATGTAAGATTGAAGAAAGTGAATTGTGCGCATTGTATCTGCTGTTGTAGTGACTGGTTCTGGGAAGTTGTCTTCAACTCagaaggccccccccccccccccagtggctTTAAGTCCACCATGATATCATTGAAACGTATTATACCCTGTGTGGTCATTAACAAAACACTATATTATACCTCACAGATTCACGTTTAGAAGTGAACATGTAATTTTTACAATCTCAAAAAGTTTCAATCCAGATGTTTGTCGTGGATCATTATAAACATGTTTGTAACGTGGTATTCATTTCATTGATTTTATTCTGTTTTGAGGGAAACAATTGTACAATGTCCACTTTTTGAGGGTATCTTGTTATTTCATACAAAAATGACTAAACA
>TU305033
GTCTTTTTACTGGGGTGGGGGTGCAAAGAAAAGCGTTAAATGTGGTTCCAATACATACGCACTGAAATGCCTTATTTTCTATCATATTGTGGAGTTGAAAAGGGGGGAACGGTGCATAGTTATTAAGCTACTGTCGATTGTTTAAAGGTTTGAGTTAAATGTGTGTTAAAAAAAATGGCATAGAAATGAAGCGATTGGCTATTGCCAGCCTAAAACCCTTGTTACGTTTTTTTGATGACAGCCATGGATAGGTCTGTGTCaaaatcctttaaaaaaaaaaacattagtaCGGTCTTCCTGATTTATGTTTGTGTCATATTTGTGCTTGCCTAAAACCATCAGCAAGCTTTACCCACATCCCGCTCCGTTGCATCCTGAATAATATCGCAGATGGCAAAAAGAAAACAATGGCATATTTAAAATGTTGTATAATAATTTCTATTGAACTTCTACAATTGATCGGATGTTGTAATATGCATTTCTTGCAAATCAAGTATTTTTAATGAACAGCTATATCATCGTAAACTGGTTTTATGGTATCTCAAACTCCAAGCTCTTTAAATGGCTTTTTaaatgtgtatagtgtaatatTCAGATGTGTTTATTTTGTAAAAACGTGATTTCTAAATGACTCACAATTTAGAAAGTCGAGTCATttttagaaagaaaaaaaaaagaagccatGCTAAGGGGTTGAATTGCCAAATTTGACTTTAATCTCAGGGTGACTTGGTCATGCACGGTAGAACAATCCTCCCCTGTAGCCCCTAGAGATGTTGTGGGGTGTTGTGTAGAGAGGTGTTATTCGATGGACCAAAAGCATAGTTGGAATTATGCTGTCACCGTGTTACCTATGCTCTATAAACTGTATGTCAGGGTCCTTAGATGACAACCCCCACCCCCCTTACCTTTATGAAATAGTTCGGTAAAGAGATGCGCTCTGTGTCTGCGCCTTGCTCAATCAGCCCTCTAAGACAGAAGTGAAGTGGTATCGCACGAGGCAGTACTCTCTTAATAGCACTCTTCTCTTCATCTGTAGTTTGATCATTCCCTTTTTGTTTAAACGTATTTGTATACTGCCCATGATGGTTATCCTCGTTTATTTTTTGTCAgtaaatgtttctgtctctgtcttattTCTTTTAATCGGAGTGTTATTTTGACTCCCTTTTCTGTAGTAATATATCTATGTTATTATTCAGATTATGAAATGTAAGATTGAAGAAAGTGAATTGTGCGCATTGTATCTGCTGTTGTAGTGACTGGTTCTGGGAAGTTGTCTTCAACTCagaaggccccccccccccccccagtggctTTAAGTCCACCATGATATCATTGAAACGTATTATACCCTGTGTGGTCATTAACAAAACACTATATTATACCTCACAGATTCACGTTTAGAAGTGAACATGTAATTTTTACAATCTCAAAAAGTTTCAATCCAGATGTTTGTCGTGGATCATTATAAACATGTTTGTAACGTGGTATTCATTTCATTGATTTTATTCTGTTTTGAGGGAAACAATTGTACAATGTCCACTTTTTGAGGGTATCTTGTTATTTCATACAAAAATGACTAAACA
>TU305032
caagaaagtgtaaaacaaaacaaatatatattttatatttgagattcatcggagtagccaccctttgccttgatgacagctttgcattctctcaaccagcttcatggggtagtcatctggaatgcatttcaattaacaggtgtgcgctgttaagtttatttgtggaatttctttccttaatacatttgagccaatcagttgtgttttgacaaggtagggttggtatacagaatatagccctatttggtaaaagaccaagtcaatattatggcaagaacagctcaaataaacaaagagaaatgacactaggtcatcatcattactttaagacatgaaggtcagtcaatgcggaacatttcaagaactttgaaagtttttttaagtgcagtcgcaaaaactatgcttcacagagttcaagtaacagacacatctcagcacatcaactgttcagaggagactgtgaatcaggccttcatggttgaattgctgcaaagaaaccactgctaaaggacaccaataagaagaagagacttgcttgggccaggaaacacgatcaatggacattagaccggtggaaatctgtcctttggtctgatgagtccaaattggagatttggagacgcagagtaggtgaacagatgatctctgcatgtgtggttcacaccgtgaagcatggaggaggtggtgtgaaggtgtgggagtgctttgctggtgacactgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatatgccatcctttttggtttgagcttagtgggactatcatttgtttttgaacaggacaatgacccaacacacctccagtctgtggaagggctacttgaccaagaaggagagtgatagagcgctgcatcagatggcctggcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggactgtagagtgagggaaaagcagccaacaagtgctcggcgtatgtgggaactgcttcaagactgttggaaaagcattcctcatgaagctggttgagagaatgccaagagtgtgcaatgctgtcatcaaggcaaagggtgg
>TU305034
gtatacagaatatagccctatttggtaaaagaccaagtcaatattatggcaagaacagctcaaataaacaaagagaaatgacactaggtcatcatcattactttaagacatgaaggtcagtcaatgcggaacatttcaagaactttgaaagtttttttaagtgcagtcgcaaaaactatgcttcacagagttcaagtaacagacacatctcagcacatcaactgttcagaggagactgtgaatcaggccttcatggttgaattgctgcaaagaaaccactgctaaaggacaccaataagaagaagagacttgcttgggccaggaaacacgatcaatggacattagaccggtggaaatctgtcctttggtctgatgagtccaaattggagatttggagacgcagagtaggtgaacagatgatctctgcatgtgtggttcacaccgtgaagcatggaggaggtggtgtgaaggtgtgggagtgctttgctggtgacactgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatatgccatcctttttggtttgagcttagtgggactatcatttgtttttgaacaggacaatgacccaacacacctccagtctgtggaagggctacttgaccaagaaggagagtgatagagcgctgcatcagatggcctggcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggactgtagagtgagggaaaagcagccaacaagtgctcggcgtatgtgggaactgcttcaagactgttggaaaagcattcctcatgaagctggttgagagaatgccaagagtgtgcaatgctgtcatcaaggcaaagggtgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU305031 False 2870 lncRNA 0.39 1 49791748 49794617
TU305033 False 1589 lncRNA 0.37 1 49791748 49793336
TU305032 False 1110 lncRNA 0.43 1 49793508 49794617
TU305034 True 888 lncRNA 0.45 1 49793508 49794395

Neighbor

gene id symbol gene type direction distance location
LOC110520112 LOC106586230 coding downstream 183634 49563841 ~ 49608114 (-)
LOC118944672 NA coding downstream 288723 49494001 ~ 49503025 (-)
dlx2a dlx2 coding downstream 313631 49475978 ~ 49478117 (-)
LOC110520101 LOC106586223 coding downstream 378635 49390493 ~ 49413113 (-)
LOC110520100 LOC106586220 coding downstream 434300 49303033 ~ 49357448 (-)
sp3a LOC106586237 coding upstream 40 49794657 ~ 49802027 (-)
LOC110520118 LOC106586238 coding upstream 20154 49814771 ~ 49862076 (-)
LOC110520119 NA coding upstream 72570 49867187 ~ 49871681 (-)
LOC110520120 LOC106586242 coding upstream 84493 49879110 ~ 49895110 (-)
LOC110520121 LOC106581751 coding upstream 100710 49895327 ~ 49901575 (-)
G268462 NA non-coding downstream 53298 49738222 ~ 49738450 (-)
G268457 NA non-coding downstream 60401 49730949 ~ 49731347 (-)
G268459 NA non-coding downstream 63610 49727737 ~ 49728138 (-)
G268458 LOC106586235 non-coding downstream 64092 49726154 ~ 49727656 (-)
G268428 LOC106586235 non-coding downstream 82675 49679007 ~ 49709073 (-)
G268501 NA non-coding upstream 10360 49804977 ~ 49805179 (-)
G268502 NA non-coding upstream 11791 49806408 ~ 49806670 (-)
G268470 NA non-coding upstream 128380 49922997 ~ 49930662 (-)
G268548 NA non-coding upstream 146259 49940876 ~ 49945765 (-)
G268310 NA other downstream 295945 49495477 ~ 49495803 (-)
LOC110505248 gcg other downstream 1758446 48032036 ~ 48033434 (-)
G265988 NA other downstream 2191933 47599218 ~ 47599815 (-)
LOC110520139 LOC106586251 other upstream 645588 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1333823 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1678707 51471899 ~ 51478510 (-)

Expression


Co-expression Network