G267503


Basic Information

Item Value
gene id G267503
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49791755 ~ 49794631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU303932
TCATTTTTGTATGAAATAACAAGATACCCTCAAAAAGTGGACATTGTACAATTGTTTCCCTCAAAACAGAATAAAATCAATGAAATGAATACCACGTTACAAACATGTTTATAATGATCCACGACAAACATCTGGATTGAAACTTTTTGAGATTGTAAAAATTACATGTTCACTTCTAAACGTGAATCTGTGAGGTATAATATAGTGTTTTGTTAATGACCACACAGGGTATAATACGTTTCAATGATATCATGGTGGACTTAAagccactggggggggggggggggccttctGAGTTGAAGACAACTTCCCAGAACCAGTCACTACAACAGCAGATACAATGCGCACAATTCACTTTCTTCAATCTTACATTTCATAATCTGAATAATAACATAGATATATTACTACAGAAAAGGGAGTCAAAATAACACTCCGATTAAAAGAaataagacagagacagaaacatttacTGACAAAAAATAAACGAGGATAACCATCATGGGCAGTATACAAATACGTTTAAACAAAAAGGGAATGATCAAACTACAGATGAAGAGAAGAGTGCTATTAAGAGAGTACTGCCTCGTGCGATACCACTTCACTTCTGTCTTAGAGGGCTGATTGAGCAAGGCGCAGACACAGAGCGCATCTCTTTACCGAACTATTTCATAAAGGTAAGGGGGGTGGGGGTTGTCATCTAAGGACCCTGACATACAGTTTATAGAGCATAGGTAACACGGTGACAGCATAATTCCAACTATGCTTTTGGTCCATCGAATAACACCTCTCTACACAACACCCCACAACATCTCTAGGGGCTACAGGGGAGGATTGTTCTACCGTGCATGACCAAGTCACCCTGAGATTAAAGTCAAATTTGGCAATTCAACCCCTTAGCatggcttcttttttttttctttctaaaaATGACTCGACTTTCTAAATTGTGAGTCATTTAGAAATCACGTTTTTACAAAATAAACACATCTGAatattacactatacacatttAAAAAGCCATTTAAAGAGCTTGGAGTTTGAGATACCATAAAACCAGTTTACGATGATATAGCTGTTCATTAAAAATACTTGATTTGCAAGAAATGCATATTACAACATCCGATCAATTGTAGAAGTTCAATAGAAATTATTATACAACATTTTAAATATGCCATTGTTTTCTTTTTGCCATCTGCGATATTATTCAGGATGCAACGGAGCGGGATGTGGGTAAAGCTTGCTGATGGTTTTAGGCAAGCACAAATATGACACAAACATAAATCAGGAAGACCGtactaatgtttttttttttaaaggattttGACACAGACCTATCCATGGCTGTCATCAAAAAAACGTAACAAGGGTTTTAGGCTGGCAATAGCCAATCGCTTCATTTCTATGCCATTTTTTTTAACACACATTTAACTCAAACCTTTAAACAATCGACAGTAGCTTAATAACTATGCACCGTTCCCCCCTTTTCAACTCCACAATATGATAGAAAATAAGGCATTTCAGTGCGTATGTATTGGAACCACATTTAACGCTTTTCTTTGCACCCCCACCCCAGTAAAAAGACTGCTTACAGACATACATAtagagtcaaaagtttggacacacctacacattaaagggtttttctttattttactatttaacaatatagtgaagatatcacaactatgaaataacacattaaatCATGTAGTATGCAAAAAGTGTAAAATCAAAATATAGATTCTTCAAagatccaccctttgccttgatgacagcattgcacactcttggcattctctcaaccagcttcatgaggaatgcttttccaacagtcttgaagcagttcccacatacgccgagcacttgttggctgcttttccctcactctacagtccaactcatcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggccatctgatgcagcgctctatcactctccttcttggtcaagtagcccttccacagactggaggtgtgttgggtcattgtcctgttcaaaaacaaatgatagtcccactaagctcaaaccaaaaaggatggcatatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcagtgtcaccagcaaagcactcccacaccttcacaccacctcctccatgcttcacggtgtgaaccacacatgcagagatcatctgttcacctactctgcgtctccaaatctccaatttggactcatcagaccaaaggacagatttccaccggtctaatgtccattgatcgtgtttcctggcccaagcaagtctcttcttcttattggtgtcctttagcagtggtttctttgcagcaattcaaccatgaaggcctgattcacagtctcctctgaacagttgatgtgctgagatgtgtctgttacttgaactctgtgaagcatagtttttgcgactgcacttaaaaaaactttcaaagttcttgaaatgttccgcattgactgaccttcatgtcttaaagtaatgatgatgacctagtgtcatttctctttgtttatttgagctgttcttgccataatattgacttggtcttttaccaaatagggctatattctgtataccaaccctaccttgtcaaaacacaactgattggctcaaatgtattaaggaaagaaattccacaaataaacttaacagcgcacacctgttaattgaaatgcattccagatgactaccccatgaagctggttgagagaatgcaaagctgtcatcaaggcaaagggtggctactccgatgaatctcaaatataaaatatatatttgttttgttttacactttcttggttactacatgatt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU303932 True 2877 lncRNA 0.39 1 49791755 49794631

Neighbor

gene id symbol gene type direction distance location
LOC118959582 NA coding upstream 24399 49757817 ~ 49767356 (+)
cdca7a LOC106586236 coding upstream 56293 49731876 ~ 49735462 (+)
zak LOC106586235 coding upstream 59818 49676929 ~ 49731937 (+)
LOC110520113 LOC106586233 coding upstream 114978 49629246 ~ 49676777 (+)
pdk1 pdk1 coding upstream 227918 49560085 ~ 49563837 (+)
LOC110520117 LOC106586239 coding downstream 67608 49862239 ~ 49865998 (+)
LOC110504188 scrn3 coding downstream 77176 49871807 ~ 49874217 (+)
LOC118944674 NA coding downstream 250087 50044718 ~ 50063834 (+)
hoxd13a hoxd13aa coding downstream 340064 50134695 ~ 50136597 (+)
hoxd12a hoxd12 coding downstream 344582 50139213 ~ 50141004 (+)
G267471 NA non-coding upstream 44053 49744473 ~ 49747702 (+)
G267427 NA non-coding upstream 176910 49614584 ~ 49614845 (+)
G267416 NA non-coding upstream 180336 49611075 ~ 49611419 (+)
G267385 NA non-coding upstream 226563 49563888 ~ 49565192 (+)
itga6a LOC106586229 non-coding upstream 234469 49529978 ~ 49557537 (+)
G267546 NA non-coding downstream 66745 49861376 ~ 49861654 (+)
G267547 NA non-coding downstream 72584 49867215 ~ 49867792 (+)
G267579 NA non-coding downstream 111831 49906462 ~ 49951847 (+)
G267580 LOC106586243 non-coding downstream 114263 49908894 ~ 49909998 (+)
G267555 NA non-coding downstream 146153 49940784 ~ 49946014 (+)
G267381 NA other upstream 235917 49554498 ~ 49555838 (+)
G267358 NA other upstream 279280 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 2959511 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3606951 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3712330 46075484 ~ 46079425 (+)
G267529 NA other downstream 41986 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 367670 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 807671 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 1103958 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1779349 51573980 ~ 51582567 (+)

Expression


Co-expression Network