Gene
RNA
| Item | Value |
|---|---|
| gene id | G267608 |
| gene name | atf2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 49975726 ~ 49976765 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atf2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human ATF2 (activating transcription factor 2). |
| description |
|---|
| cyclic AMP-dependent transcription factor ATF-2 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU304069 | True | 281 | lncRNA | 0.49 | 2 | 49975726 | 49976765 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504188 | scrn3 | coding | upstream | 101509 | 49871807 ~ 49874217 (+) |
| LOC110520117 | LOC106586239 | coding | upstream | 109728 | 49862239 ~ 49865998 (+) |
| LOC118959582 | NA | coding | upstream | 208370 | 49757817 ~ 49767356 (+) |
| cdca7a | LOC106586236 | coding | upstream | 240264 | 49731876 ~ 49735462 (+) |
| zak | LOC106586235 | coding | upstream | 243789 | 49676929 ~ 49731937 (+) |
| LOC118944674 | NA | coding | downstream | 67953 | 50044718 ~ 50063834 (+) |
| hoxd13a | hoxd13aa | coding | downstream | 157930 | 50134695 ~ 50136597 (+) |
| hoxd12a | hoxd12 | coding | downstream | 162448 | 50139213 ~ 50141004 (+) |
| hoxd11a | hoxd11aa | coding | downstream | 167890 | 50144655 ~ 50146492 (+) |
| hoxd10a | hoxd10 | coding | downstream | 170046 | 50146811 ~ 50153227 (+) |
| G267596 | NA | non-coding | upstream | 18345 | 49957073 ~ 49957381 (+) |
| G267594 | NA | non-coding | upstream | 19860 | 49955516 ~ 49955866 (+) |
| G267579 | NA | non-coding | upstream | 23879 | 49906462 ~ 49951847 (+) |
| G267555 | NA | non-coding | upstream | 29712 | 49940784 ~ 49946014 (+) |
| G267580 | LOC106586243 | non-coding | upstream | 65728 | 49908894 ~ 49909998 (+) |
| G267551 | atp5g2 | non-coding | downstream | 2451 | 49979216 ~ 49981768 (+) |
| G267615 | NA | non-coding | downstream | 9186 | 49985951 ~ 49986164 (+) |
| G268618 | NA | non-coding | downstream | 59058 | 50035823 ~ 50036023 (+) |
| G268620 | NA | non-coding | downstream | 66568 | 50043333 ~ 50043543 (+) |
| G268604 | NA | non-coding | downstream | 107345 | 50084110 ~ 50085157 (+) |
| G267529 | NA | other | upstream | 120224 | 49836617 ~ 49855502 (+) |
| G267381 | NA | other | upstream | 419888 | 49554498 ~ 49555838 (+) |
| G267358 | NA | other | upstream | 463251 | 49510803 ~ 49512475 (+) |
| LOC110520046 | LOC106586167 | other | upstream | 3143482 | 46801058 ~ 46832288 (+) |
| G263859 | LOC107588258 | other | upstream | 3790922 | 46184134 ~ 46184804 (+) |
| hoxd3a | hoxd3 | other | downstream | 185536 | 50162278 ~ 50184327 (+) |
| LOC110520146 | ino80d | other | downstream | 625537 | 50601983 ~ 50618761 (+) |
| G269291 | rap2a | other | downstream | 921824 | 50898589 ~ 50900277 (+) |
| LOC110520169 | il1rl1 | other | downstream | 1597215 | 51573980 ~ 51582567 (+) |
| acvr2aa | LOC106586327 | other | downstream | 3190187 | 53124656 ~ 53172428 (+) |
