G267551 (atp5g2)


Basic Information

Item Value
gene id G267551
gene name atp5g2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49979216 ~ 49981768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU303996
GTCTAGATTTATTTAATTCCATTTACAAGAGAAAGTGCCCACTTGCTGCCTACTTACAGAATGCTATTGACCTGCACTTGAACCAACGACAACATAAATGTGGACCCACAGAAGCAAACACATGATGCACTGAAAATGGCAAATGCACCAGACTGATTTACATTACGTCTAAGCAGTTCCTTTGTATAATCCCATGTTGACATTCAATAGAAGCTAGTTGGCGTCTTGATTGTGGTGAAACATGATTCCTTACATAGAAAACATACTGCCATATGTCAACTAGTCAAATACATGCATTTTAATTATGTAATTTCTTACATTTTTTACAATACATGTTTCTGTTATTTTGAGAGTGTCGGACAGACTTGAAAATGTACATTTCCATGACACCAACACAGAACAATTTTGGTAGCCACAATAAAATATGTAGTCACATCTGTAATTACAGTTTCTatagacagatttttttttacatagcaaACAAGATTAAGAAAGCAACCATCAAACAGAATAGGCCCATAGCTTCAGACAGGGCAAATCCCAGGATAGCGTAGGAGAAGAGCTGCTGCTTCAATGATGGGTTCTGGCATATCCAATGATGAGACTGCCGAACACTGTTCCAATTCCAGCACCAGATCCAGCCACTCCGACTGTGGCGGCTCCAGCACCAATGAATTTGGCAGCGGTATCAATGTCCCTGCTCACAGCACTGGTCTGGAAGCCTCTGAGAGCTACCTGGGTGAAGGGGCTCTGTGGCATGAGGGCTACGTTTCCTCTGTATTGACCTCAGGCCTGGACAGCATAGAGGCAGACAGGGGTCTGTAAAGAGCACGGGAGCCAGCACGGACCAGAGCCGGCGTGGAGACGAACTTTGCACAGGCGTACATGATCAATTTAGTCTGTTTTAACCTGGTCGGTCAAATTTGATTGAAGCCGGGTCTTTTTGTGTTGTGCTAGGTGTTGTTTTAAAGAAGGATGAAAAAGGATTTACAATGGACAATGTCTAACA
>TU303997
GTCTAGATTTATTTAATTCCATTTACAAGAGAAAGTGCCCACTTGCTGCCTACTTACAGAATGCTATTGACCTGCACTTGAACCAACGACAACATAAATGTGGACCCACAGAAGCAAACACATGATGCACTGAAAATGGCAAATGCACCAGACTGATTTACATTACGTCTAAGCAGTTCCTTTGTATAATCCCATGTTGACATTCAATAGAAGCTAGTTGGCGTCTTGATTGTGGTGAAACATGATTCCTTACATAGAAAACATACTGCCATATGTCAACTAGTCAAATACATGCATTTTAATTATGTAATTTCTTACATTTTTTACAATACATGTTTCTGTTATTTTGAGAGTGTCGGACAGACTTGAAAATGTACATTTCCATGACACCAACACAGAACAATTTTGGTAGCCACAATAAAATATGTAGTCACATCTGTAATTACAGTTTCTatagacagatttttttttacatagcaaACAAGATTAAGAAAGCAACCATCAAACAGAATAGGCCCATAGCTTCAGACAGGGCAAATCCCAGGATAGCGTAGGAGAAGAGCTGCTGCTTCAATGATGGGTTCTGGCATATCCAATGATGAGACTGCCGAACACTGTTCCAATTCCAGCACCAGATCCAGCCACTCCGACTGTGGCGGCTCCAGCACCAATGAATTTGGCAGCGGTATCAATGTCCCTGCTCACAGCACTGGTCTGGAAGCCTCTGAGAGCTACCTGGGTGAAGGGGCTCTGTGGCATGAGGGCTACGTTTCTCTGATGTATTGACCTCAGGCCTGGACAGCATAGAGGCAGACAGGGGTCTGTAAAGAGCACGGGAGCCAGCACGGACCAGAGCCGGCGTGGAGACGAACTTTGCACAGGCGTACATGATCAATTTAGTCTGTTTTAACCTGGTCGGTCAAATTTGATTGAAGCCGGGTCTTTTTGTGTTGTGCTAGGTGTTGTTTTAAAGAAGGATGAAAAAGGATTTACAATGGACAATGTCTAACA

Function

symbol description
atp5g2 Predicted to enable lipid binding activity and proton transmembrane transporter activity. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; eye; genitourinary system; heart; and nervous system. Human ortholog(s) of this gene implicated in renal cell carcinoma and urinary bladder cancer. Orthologous to human ATP5MC2 (ATP synthase membrane subunit c locus 2).

NR:

description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303996 False 1009 lncRNA 0.43 5 49979216 49981768
TU303997 True 1011 lncRNA 0.43 5 49979216 49981768

Neighbor

gene id symbol gene type direction distance location
LOC110504188 scrn3 coding upstream 104999 49871807 ~ 49874217 (+)
LOC110520117 LOC106586239 coding upstream 113218 49862239 ~ 49865998 (+)
LOC118959582 NA coding upstream 211860 49757817 ~ 49767356 (+)
cdca7a LOC106586236 coding upstream 243754 49731876 ~ 49735462 (+)
zak LOC106586235 coding upstream 247279 49676929 ~ 49731937 (+)
LOC118944674 NA coding downstream 62950 50044718 ~ 50063834 (+)
hoxd13a hoxd13aa coding downstream 152927 50134695 ~ 50136597 (+)
hoxd12a hoxd12 coding downstream 157445 50139213 ~ 50141004 (+)
hoxd11a hoxd11aa coding downstream 162887 50144655 ~ 50146492 (+)
hoxd10a hoxd10 coding downstream 165043 50146811 ~ 50153227 (+)
G267608 atf2 non-coding upstream 2451 49975726 ~ 49976765 (+)
G267596 NA non-coding upstream 21835 49957073 ~ 49957381 (+)
G267594 NA non-coding upstream 23350 49955516 ~ 49955866 (+)
G267579 NA non-coding upstream 27369 49906462 ~ 49951847 (+)
G267615 NA non-coding downstream 4183 49985951 ~ 49986164 (+)
G268618 NA non-coding downstream 54055 50035823 ~ 50036023 (+)
G268620 NA non-coding downstream 61565 50043333 ~ 50043543 (+)
G268604 NA non-coding downstream 102342 50084110 ~ 50085157 (+)
G268714 NA non-coding downstream 121011 50102779 ~ 50103056 (+)
G267529 NA other upstream 123714 49836617 ~ 49855502 (+)
G267381 NA other upstream 423378 49554498 ~ 49555838 (+)
G267358 NA other upstream 466741 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3146972 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3794412 46184134 ~ 46184804 (+)
hoxd3a hoxd3 other downstream 180533 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 620534 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 916821 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1592212 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 3185184 53124656 ~ 53172428 (+)

Expression


Co-expression Network