G268604


Basic Information

Item Value
gene id G268604
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50084110 ~ 50085157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305183
CATTCTGACTGACTCAAGTCTTTattcatttcaaagtggaaacaTAAAACGCATCAAGGCACTCAGGTGCAGAGGACAGCAAATACAGCTTCATTTCTCCTCTTAAGCAATAAATAAGTACTACTATGACTGTACTATTACTGTGTAAACGTGGTTAGTCCCATTGTACTAGGACTACCCAAAACCTAGTCAATACTGTTAAAAAGGCACTAACGTATACCATAGTATCTATAAATATCTGCCCCCTAAAAATATTTCATATCACACCAGACAGGACATTTTTTGCACTTCTGTAGACATTGTAAGACATTCAGTCAAAAGACAAACTActaaaacaatgttgcaaattacttaatttaaaaaaagaaacccTCATTCTAAATGTGCAGAAACTCAAACTATTTAGCTAGATTTTTGCTCATTATTGTCATCATCTTGCATGTCTGTAGACTACATGGATAGAGACGAGTCAAATACAATAGTAAAGCGGATAAGCAATTTCCCACATATGGAAAACACACTATAAGTGCATCAACGCTAAACGCTTAGCTAGCTGAACTAAGTGTGCTGTTGAGTAATGTATAGAAGTGAAAGTACAGTTCATGAAAGTACCGTGGACATGACGTAAAACCTCAAGTGTTGGCTGTTCACTTTTATTCCAATCATTAAATTCATATTGGTACCATGACAACTGACAAGAAAATACCTTTAAGTTAATACCAAACCCGTTGCCTGTTATTCTGCCATTCTACCTCACAGCATTAATCTAACCATTATTAAGTTGACTTTAAAAACagaaagaaccccccccccctgaaaaaAGTAGAATATAGTTCTAGCATAAATTAATGTGTTGAAATGACATTCTATTCAACCTCCATGTCTGATACATCCAGCTCCCCGTCTGACTTCACTGGGGTGAGTTGCAGAGATTGTGAAGTTCCTGGCACTTCTGTTTCTGGGGCAGTATCTGTGGTCAGAGTCACCAACTCTTGGATCTCTTCAGCTGGGGGAGTAGGCTGCTTC
>TU305184
CATTCTGACTGACTCAAGTCTTTattcatttcaaagtggaaacaTAAAACGCATCAAGGCACTCAGGTGCAGAGGACAGCAAATACAGCTTCATTTCTCCTCTTAAGCAATAAATAAGTACTACTATGACTGTACTATTACTGTGTAAACGTGGTTAGTCCCATTGTACTAGGACTACCCAAAACCTAGTCAATACTGTTAAAAAGGCACTAACGTATACCATAGTATCTATAAATATCTGCCCCCTAAAAATATTTCATATCACACCAGACAGGACATTTTTTGCACTTCTGTAGACATTGTAAGACATTCAGTCAAAAGACAAACTActaaaacaatgttgcaaattacttaatttaaaaaaagaaacccTCATTCTAAATGTGCAGAAACTCAAACTATTTAGCTAGATTTTTGCTCATTATTGTCATCATCTTGCATGTCTGTAGACTACATGGATAGAGACGAGTCAAATACAATAGTAAAGCGGATAAGCAATTTCCCACATATGGAAAACACACTATAAGTGCATCAACGCTAAACGCTTAGCTAGCTGAACTAAGTGTGCTGTTGAGTAATGTATAGAAGTGAAAGTACAGTTCATGAAAGTACCGTGGACATGACGTAAAACCTCAAGTGTTGGCTGTTCACTTTTATTCCAATCATTAAATTCATATTGGTACCATGACAACTGACAAGAAAATACCTTTAAGTTAATACCAAACCCGTTGCCTGTTATTCTGCCATTCTACCTCACAGCATTAATCTAACCATTATTAAGTTGACTTTAAAAACagaaagaaccccccccctgaaaaaAGTAGAATATAGTTCTAGCATAAATTAATGTGTTGAAATGACATTCTATTCAACCTCCATGTCTGATACATCCAGCTCCCCGTCTGACTTCACTGGGGTGAGTTGCAGAGATTGTGAAGTTCCTGGCACTTCTGTTTCTGGGGCAGTATCTGTGGTCAGAGTCACCAACTCTTGGATCTCTTCAGCTGGGGGAGTAGGCTGCTTC
>TU305185
CATTCTGACTGACTCAAGTCTTTattcatttcaaagtggaaacaTAAAACGCATCAAGGCACTCAGGTGCAGAGGACAGCAAATACAGCTTCATTTCTCCTCTTAAGCAATAAATAAGTACTACTATGACTGTACTATTACTGTGTAAACGTGGTTAGTCCCATTGTACTAGGACTACCCAAAACCTAGTCAATACTGTTAAAAAGGCACTAACGTATACCATAGTATCTATAAATATCTGCCCCCTAAAAATATTTCATATCACACCAGACAGGACATTTTTTGCACTTCTGTAGACATTGTAAGACATTCAGTCAAAAGACAAACTActaaaacaatgttgcaaattacttaatttaaaaaaagaaacccTCATTCTAAATGTGCAGAAACTCAAACTATTTAGCTAGATTTTTGCTCATTATTGTCATCATCTTGCATGTCTGTAGACTACATGGATAGAGACGAGTCAAATACAATAGTAAAGCGGATAAGCAATTTCCCACATATGGAAAACACACTATAAGTGCATCAACGCTAAACGCTTAGCTAGCTGAACTAAGTGTGCTGTTGAGTAATGTATAGAAGTGAAAGTACAGTTCATGAAAGTACCGTGGACATGACGTAAAACCTCAAGTGTTGGCTGTTCACTTTTATTCCAATCATTAAATTCATATTGGTACCATGACAACTGACAAGAAAATACCTTTAAGTTAATACCAAACCCGTTGCCTGTTATTCTGCCATTCTACCTCACAGCATTAATCTAACCATTATTAAGTTGACTTTAAAAACagaaagaaccccccccccccctgaaaaaAGTAGAATATAGTTCTAGCATAAATTAATGTGTTGAAATGACATTCTATTCAACCTCCATGTCTGATACATCCAGCTCCCCGTCTGACTTCACTGGGGTGAGTTGCAGAGATTGTGAAGTTCCTGGCACTTCTGTTTCTGGGGCAGTATCTGTGGTCAGAGTCACCAACTCTTGGATCTCTTCAGCTGGGGGAGTAGGCTGCTTC
>TU305186
CATTCTGACTGACTCAAGTCTTTattcatttcaaagtggaaacaTAAAACGCATCAAGGCACTCAGGTGCAGAGGACAGCAAATACAGCTTCATTTCTCCTCTTAAGCAATAAATAAGTACTACTATGACTGTACTATTACTGTGTAAACGTGGTTAGTCCCATTGTACTAGGACTACCCAAAACCTAGTCAATACTGTTAAAAAGGCACTAACGTATACCATAGTATCTATAAATATCTGCCCCCTAAAAATATTTCATATCACACCAGACAGGACATTTTTTGCACTTCTGTAGACATTGTAAGACATTCAGTCAAAAGACAAACTActaaaacaatgttgcaaattacttaatttaaaaaaagaaacccTCATTCTAAATGTGCAGAAACTCAAACTATTTAGCTAGATTTTTGCTCATTATTGTCATCATCTTGCATGTCTGTAGACTACATGGATAGAGACGAGTCAAATACAATAGTAAAGCGGATAAGCAATTTCCCACATATGGAAAACACACTATAAGTGCATCAACGCTAAACGCTTAGCTAGCTGAACTAAGTGTGCTGTTGAGTAATGTATAGAAGTGAAAGTACAGTTCATGAAAGTACCGTGGACATGACGTAAAACCTCAAGTGTTGGCTGTTCACTTTTATTCCAATCATTAAATTCATATTGGTACCATGACAACTGACAAGAAAATACCTTTAAGTTAATACCAAACCCGTTGCCTGTTATTCTGCCATTCTACCTCACAGCATTAATCTAACCATTATTAAGTTGACTTTAAAAACagaaagaacccccccccccctgaaaaaAGTAGAATATAGTTCTAGCATAAATTAATGTGTTGAAATGACATTCTATTCAACCTCCATGTCTGATACATCCAGCTCCCCGTCTGACTTCACTGGGGTGAGTTGCAGAGATTGTGAAGTTCCTGGCACTTCTGTTTCTGGGGCAGTATCTGTGGTCAGAGTCACCAACTCTTGGATCTCTTCAGCTGGGGGAGTAGGCTGCTTC

Function

NR:

description
protein lunapark-A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305183 False 1026 lncRNA 0.38 2 50084110 50085157
TU305184 False 1024 lncRNA 0.38 2 50084110 50085157
TU305185 False 1028 lncRNA 0.38 2 50084110 50085157
TU305186 True 1027 lncRNA 0.38 2 50084110 50085157

Neighbor

gene id symbol gene type direction distance location
LOC118944674 NA coding upstream 20276 50044718 ~ 50063834 (+)
LOC110504188 scrn3 coding upstream 209893 49871807 ~ 49874217 (+)
LOC110520117 LOC106586239 coding upstream 218112 49862239 ~ 49865998 (+)
LOC118959582 NA coding upstream 316754 49757817 ~ 49767356 (+)
cdca7a LOC106586236 coding upstream 348648 49731876 ~ 49735462 (+)
hoxd13a hoxd13aa coding downstream 49538 50134695 ~ 50136597 (+)
hoxd12a hoxd12 coding downstream 54056 50139213 ~ 50141004 (+)
hoxd11a hoxd11aa coding downstream 59498 50144655 ~ 50146492 (+)
hoxd10a hoxd10 coding downstream 61654 50146811 ~ 50153227 (+)
hoxd9a hoxd9aa coding downstream 70678 50155835 ~ 50158848 (+)
G268620 NA non-coding upstream 40567 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 48087 50035823 ~ 50036023 (+)
G267615 NA non-coding upstream 97946 49985951 ~ 49986164 (+)
G267551 atp5g2 non-coding upstream 102342 49979216 ~ 49981768 (+)
G267608 atf2 non-coding upstream 107345 49975726 ~ 49976765 (+)
G268714 NA non-coding downstream 17622 50102779 ~ 50103056 (+)
G268877 NA non-coding downstream 147314 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 207528 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 227355 50312512 ~ 50312731 (+)
G267529 NA other upstream 228608 49836617 ~ 49855502 (+)
G267381 NA other upstream 528272 49554498 ~ 49555838 (+)
G267358 NA other upstream 571635 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3251866 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3899306 46184134 ~ 46184804 (+)
hoxd3a hoxd3 other downstream 77144 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 517145 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 813432 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1488823 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 3081795 53124656 ~ 53172428 (+)

Expression


Co-expression Network