G268938


Basic Information

Item Value
gene id G268938
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50321487 ~ 50322542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305565
aaagtagccaccctttgccttgatagctttgcacactcttggcattctatcaaccagcttcacctgggatgcttttccaacagtcttgaaggagttgccacatatgctgagcacttgttggctgcttttcctttactctgcggtccatctcaattgggttgagatcaggtgattgtggaggccaggtcatctgatgtagcactccatcactctcctccatggtcaaatagcccttacacagcctggaggtttgttgggtcattgtcctgttgaaaaacaaatgatagtccctctaaGCGCTAacaagatgggatggtgtatcgctgcacaATGCTGTagttgccatgctggttaagtgtgccttgaattctaaataaatcaccagcaaagcaccatcacacctccattattcacggtgggaaccacacaagtggagatcatccgttcacctactctgcgtctcacaaagacacagcggttggaaccaaaaccgctaatttggattcatcagactgtccattgctcgtgtttcttggcccaagcaagtcttcttgtTATTGATGTCCTTtcatagtggtttctttgcagcaatttgaccatgaaggtctgattcacgcagtctcctctgaacagttgatgttgatgtgtcttaCTTAAACTCTGAAGCATAAAtgtgggctgcaatttctaaggctggtaactctaaggaacatatcctctgcagttGAGGTAACtcggggtcttcctttcctgtggcgatcctcatgagagctagtttcatcatagcgcttaatggtttttgagacagcacttgaagaaactttcaaattcttgaaatgttccggattgactgaccttcatgtcttaaggtaatgatggactgatgtttctctttgcttatttgagctgttcttgctataatatggacttggtcttttacctaatacggctatcttctgtataccccctaccttgtcacaacgcaactgatttggctcaaacgcattaaggaaagaaattccacaaatgaactttagcAAGGCACATCTGTTGATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305565 True 1056 lncRNA 0.44 1 50321487 50322542

Neighbor

gene id symbol gene type direction distance location
LOC110520134 ro32 coding upstream 193 50316070 ~ 50321294 (+)
LOC110505268 hoxd1aa coding upstream 132793 50187165 ~ 50188694 (+)
hoxd3a hoxd3 coding upstream 137160 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding upstream 149090 50169601 ~ 50172397 (+)
hoxd9a hoxd9aa coding upstream 162639 50155835 ~ 50158848 (+)
LOC110520136 NA coding downstream 11758 50334300 ~ 50336340 (+)
agps LOC106586249 coding downstream 15625 50338167 ~ 50377090 (+)
osbpl6 LOC106586252 coding downstream 132497 50455039 ~ 50519865 (+)
gpr1 LOC106586257 coding downstream 266416 50588958 ~ 50592305 (+)
LOC110520148 LOC106586260 coding downstream 273074 50595616 ~ 50601655 (+)
G268970 NA non-coding upstream 8756 50312512 ~ 50312731 (+)
G268956 NA non-coding upstream 28594 50292685 ~ 50292893 (+)
G268877 NA non-coding upstream 88797 50232471 ~ 50232690 (+)
hoxd12a hoxd12 non-coding upstream 180573 50139213 ~ 50141004 (+)
G268714 NA non-coding upstream 218431 50102779 ~ 50103056 (+)
G268939 NA non-coding downstream 227 50322769 ~ 50323146 (+)
G268936 NA non-coding downstream 740 50323282 ~ 50324581 (+)
G268941 NA non-coding downstream 2141 50324683 ~ 50324958 (+)
G268987 NA non-coding downstream 47409 50369951 ~ 50370275 (+)
G267529 NA other upstream 465985 49836617 ~ 49855502 (+)
G267381 NA other upstream 765649 49554498 ~ 49555838 (+)
G267358 NA other upstream 809012 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3489243 46801058 ~ 46832288 (+)
LOC110520146 ino80d other downstream 279760 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 576047 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1251438 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2844410 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2898885 53174264 ~ 53235027 (+)

Expression


Co-expression Network