G268936


Basic Information

Item Value
gene id G268936
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50323282 ~ 50324581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305563
acaggttaagacatttttgcaaatgtatttctaaaaaaacgtatcacatttacataagtattcagacgctttactcggtactttgttgaagcacctttggcaacgattacaccctagagtttctcccattctttgcagatcctcaagctctgtcaggttggatgaggagtgacgctgcacagatattttcaggtctctccagagatgttcgatcaggttcaaatccgggctctggctgggccactcaaggacattcagagacgcgccaaagccactcctgtgttgtcttgactgtgttcttagggtctttgtcctattggaaggtgaacctccgccctagtctgaggtcctgagcactctggagcggGTTTTCAACAAgtatctctttgtactttgctccgttcatctttcccccgatccggactagtctcccagtccctgcctctgaaaaacatcaccacagcatgatgctgcctcaaccatgtttcaccgtagggatggtattggccaggtgatgagcggtgcctggtttcctccaggtgtaacgcttgacattcaggccataagttcaatcttggtttcatcagaccaaagaatcttgtttccaTCGTCTGAGAGCCTTTAGgcgtcttttggcaaactccaagcaggctgtcgtgcctttttactgaggagtggcttctgtctggccactctataaaggcctgactggtggagtgctgcagagatagttgtccttctggaaggttctcctatttccacagaggaactgtggtGCTCTGACAGTGACAATTGgattctttgtcacctccctgaccaaggcccttctcccccgattgcgcaGTTTGACCGGGcgtgccagctctaggaagagtcttggtggttccaaaattcttccatttaagaatgatggaggccactgtgttcttggggatcttcaacgTTGCTGaaacgttttggtacccttccccagatctgtgcccgaCATTATCCTGTCTCTTgaggcaattccttcgacctcatggcttggtttttgctctgatgtgcactgtcaactgtgagaccttatatagataggtgtgtgtctttgcaaatcatgtccaatcaattgaatttaccacaggtggacaccaatcaagttgtagaaacagttcaaggatgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaatggtctgaatatttacgtaaatcaggtatttctgttttttatacatttgcaaacatttctaaaaacctgttgtcGCATTGTCATTGTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305563 True 1300 lncRNA 0.46 1 50323282 50324581

Neighbor

gene id symbol gene type direction distance location
LOC110520134 ro32 coding upstream 1988 50316070 ~ 50321294 (+)
LOC110505268 hoxd1aa coding upstream 134588 50187165 ~ 50188694 (+)
hoxd3a hoxd3 coding upstream 138955 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding upstream 150885 50169601 ~ 50172397 (+)
hoxd9a hoxd9aa coding upstream 164434 50155835 ~ 50158848 (+)
LOC110520136 NA coding downstream 9719 50334300 ~ 50336340 (+)
agps LOC106586249 coding downstream 13586 50338167 ~ 50377090 (+)
osbpl6 LOC106586252 coding downstream 130458 50455039 ~ 50519865 (+)
gpr1 LOC106586257 coding downstream 264377 50588958 ~ 50592305 (+)
LOC110520148 LOC106586260 coding downstream 271035 50595616 ~ 50601655 (+)
G268939 NA non-coding upstream 136 50322769 ~ 50323146 (+)
G268938 NA non-coding upstream 740 50321487 ~ 50322542 (+)
G268970 NA non-coding upstream 10551 50312512 ~ 50312731 (+)
G268956 NA non-coding upstream 30389 50292685 ~ 50292893 (+)
G268877 NA non-coding upstream 90592 50232471 ~ 50232690 (+)
G268941 NA non-coding downstream 102 50324683 ~ 50324958 (+)
G268987 NA non-coding downstream 45370 50369951 ~ 50370275 (+)
G268994 NA non-coding downstream 62589 50387170 ~ 50387393 (+)
G268997 NA non-coding downstream 65365 50389946 ~ 50390157 (+)
G267529 NA other upstream 467780 49836617 ~ 49855502 (+)
G267381 NA other upstream 767444 49554498 ~ 49555838 (+)
G267358 NA other upstream 810807 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3491038 46801058 ~ 46832288 (+)
LOC110520146 ino80d other downstream 277721 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 574008 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1249399 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2842371 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2896846 53174264 ~ 53235027 (+)

Expression


Co-expression Network