G268989 (LOC106586251)


Basic Information

Item Value
gene id G268989
gene name LOC106586251
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50440203 ~ 50443011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305623
ATTGTTTAGCATGTAATTTATTCAATTAACTCAAATAGAACCAGATCATGAGGTATTGGCTACATAAGACATTACCATGGTCTGTAGTAGACGTTACTTTCAAGACAACCCTTTAAAATTAGAGACTATTCCAAATCTGATTGAGGGTTTGCATTAGCAAGTATTAAAACCACTACCGATACAATTAGTTGAAActtttttttgtgaaacaaatATTACACTGCTTTGACCCAATAAATTATGGAATACTTACAGTCTATGGATCAATAATTTATGTATACGTACTAGAGCCTGTTAGACCAAGGGATATAAATTACACCATCTAAATGGAGGTACAGCTGTGAAATATGGCAACTGATCATGCAAACACCATTGAGTCCCAGCAGGTATGTCAAGCAGGCTATTCAAATAAATTGTTAAAATGCTAAGAATTAGTCTTAGCTTCTTGAAAGAGCCACCCCCCTTCTCCGCTGAACAGTTGATGATATTTATATAAAGATACAGAAAGGGAAGTCTATACATTGAACAAAGCGTAGACAGTGGTCTACGAAGTTGCCGACTTCAAATATGCTATAAGATCTGCACGCTCGCCCTTCTTCTTGATGCCAGCAAATATCATCTTTGTTCCAGGAATGTATTTCTTGGGGTTCTCCAAGTACGTCATGAGGGTATCGGTTTGGACCAACCTTGTGCTTTCCTCCATTTTCAACAGTATGACACTGGGCACACTTCTGGACAAATGCCTTCTTTCCCTTAGCAATATCACCCATGCTTCCTATTGGACAAAATACAAAGAGGTAGCTATAAAAACAGAAGACCATCTCTGTAGTAGTACCCAAAAAT
>TU305624
ATTGTTTAGCATGTAATTTATTCAATTAACTCAAATAGAACCAGATCATGAGGTATTGGCTACATAAGACATTACCATGGTCTGTAGTAGACGTTACTTTCAAGACAACCCTTTAAAATTAGAGACTATTCCAAATCTGATTGAGGGTTTGCATTAGCAAGTATTAAAACCACTACCGATACAATTAGTTGAAActtttttttgtgaaacaaatATTACACTGCTTTGACCCAATAAATTATGGAATACTTACAGTCTATGGATCAATAATTTATGTATACGTACTAGAGCCTGTTAGACCAAGGGATATAAATTACACCATCTAAATGGAGGTACAGCTGTGAAATATGGCAACTGATCATGCAAACACCATTGAGTCCCAGCAGGTATGTCAAGCAGGCTATTCAAATAAATTGTTAAAATGCTAAGAATTAGTCTTAGCTTCTTGAAAGAGCCACCCCCCTTCTCCGCTGAACAGTTGATGATATTTATATAAAGATACAGAAAGGGAAGTCTATACATTGAACAAAGCGTAGACAGTGGTCTACGAAGTTGCCGACTTCAAATATGCTATAAGATCTGCACGCTCGCCCTTCTTCTTGATGCCAGCAAATATCATCTTTGTTCCAGGAATGTATTTCTTGGGGTTCTCCAAGTACGTCATGAGGGTATCGGTTTGGACCAACCTTGTGCTTTCCTCCATTTTCAACAGTATGACACTGGGCACACTTCTGGACAAATGCCTTCTTTCCCTTAGCAATATCACCCATGCTTCCTGTTCAATGTATGTATTCCTTAAAAGTTTCGTTCACCTTGAGCTGTCTCCACGCCAGTAGCGTAATGTAACAAATGCAAGCAAGTCTCTTTCCTTCCCTGAAAAAATATGTAGCTTAAAACGTCAGTCCCTTATTGGTCAGTCACACATCTGCGTCATCATGACGAACACCGCTGTTTTGCGTTCAAGCCCTAGGCCTAGATGGAGTTGAGGAAGAAGTGACATAATGTAC

Function

NR:

description
Cytochrome c

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305623 False 843 lncRNA 0.37 2 50440203 50441235
TU305624 True 1007 lncRNA 0.39 3 50440203 50443011

Neighbor

gene id symbol gene type direction distance location
agps LOC106586249 coding upstream 63113 50338167 ~ 50377090 (+)
LOC110520136 NA coding upstream 104295 50334300 ~ 50336340 (+)
LOC110520134 ro32 coding upstream 118909 50316070 ~ 50321294 (+)
LOC110505268 hoxd1aa coding upstream 251509 50187165 ~ 50188694 (+)
hoxd4a hxd4a coding upstream 267806 50169601 ~ 50172397 (+)
osbpl6 LOC106586252 coding downstream 12028 50455039 ~ 50519865 (+)
gpr1 LOC106586257 coding downstream 145947 50588958 ~ 50592305 (+)
LOC110520148 LOC106586260 coding downstream 152605 50595616 ~ 50601655 (+)
LOC110520146 ino80d coding downstream 158972 50601983 ~ 50618761 (+)
LOC110520157 LOC106586094 coding downstream 515003 50958014 ~ 50959445 (+)
G269022 NA non-coding upstream 24660 50415338 ~ 50415543 (+)
G269019 NA non-coding upstream 29953 50410023 ~ 50410250 (+)
G269009 NA non-coding upstream 31136 50408856 ~ 50409067 (+)
G269006 NA non-coding upstream 35479 50404427 ~ 50404724 (+)
G269003 NA non-coding upstream 40699 50399264 ~ 50399504 (+)
G269085 NA non-coding downstream 84527 50527538 ~ 50530940 (+)
G269126 NA non-coding downstream 201982 50644993 ~ 50645192 (+)
G269223 NA non-coding downstream 344560 50787571 ~ 50788258 (+)
G269224 NA non-coding downstream 345789 50788800 ~ 50790055 (+)
G269231 LOC106586263 non-coding downstream 361579 50804590 ~ 50809753 (+)
hoxd3a hoxd3 other upstream 257177 50162278 ~ 50184327 (+)
G267529 NA other upstream 584701 49836617 ~ 49855502 (+)
G267381 NA other upstream 884365 49554498 ~ 49555838 (+)
G267358 NA other upstream 927728 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3607959 46801058 ~ 46832288 (+)
G269291 rap2a other downstream 455578 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1130969 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2723941 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2778416 53174264 ~ 53235027 (+)

Expression


Co-expression Network