G269223


Basic Information

Item Value
gene id G269223
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50787571 ~ 50788258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305888
GCCACATTGAGTATAATTATCTTAGTGCTGCACCTGCTGACCTCGAGGGTGGGTGACAATGGGCGCACATCTCTACGGGCTAGAATGTAACACACAAGGCACAATAGCAAACAGGCGTGTAGCATAGAGAGCTTAGAAGGGGATGGAAATTGTCTAGTGTACTTACAACAAGCACGGAGGTCCTGACAACCTCAGAGACACTTTGCCTTAGTTCAGCCGCAGTGCCAGGTTTACTTAGTCCCCTTGTAAATTTCCTGGTCTCCGGATGTACTGGAACTGACATTGTCGAGTCCTGCCTTTCATCAATTTCTTTAGGAATTTATAAAACGTCAAAGAAGAAGAGTAAGAACGGAATCATCAGCCGGCTTTTTCCGTTTCTCCGTCAGCACAAGAGCGCACCTTGAGTTTAAAACTGGGTCATGTTGTGCTGGTTCACTCTGCCTTTTTGATCTCATAATTTGCAACAATTACTAGTGAAAGTTGTATTGTATTATCCCGCAGCTGTTGCACCCCCCCGCTGAGTTGTTGTTGT
>TU305885
CTGACAACCTCAGAGACACTTTGCCTTAGTTCAGCCGCAGTGCCAGGTTTACTTAGTCCCCTTGTAAATTTCCTGGTCTCCGGATGTACTGGAACTGACATTGTCGAGTCCTGCCTTTCATCAATTTCTTTAGGAATTTATAAAACGTCAAAGAAGAAGAGTAAGAACGGAATCATCAGCCGGCTTTTTCCGTTTCTCCGTCAGCACAAGAGCGCACCTTGAGTTTAAAACTGGGTCATGTTGTGCTGGTTCACTCTGCCTTTTTGATCTCATAATTTGCAACAATTACTAGTGAAAGTTGTATTGTATTATCCCGCAGCTGTTGCACCCCCCCGCTGAGTTGTTGTTGTCATAATAAACCATTCTTCCGCGCGTTCACCGTCTCATTACGGCTGTCCGTCGTCGGTCTCGCTATGCTCGGTGTACATGCGACGCCAGCCAGAAAGCGTAATCTGCGTGCGTCGTTCTACCAcgcttctccactcctccctcctccagtgATTTAC
>TU305886
CTGACAACCTCAGAGACACTTTGCCTTAGTTCAGCCGCAGTGCCAGGTTTACTTAGTCCCCTTGTAAATTTCCTGGTCTCCGGATGTACTGGAACTGACATTGTCGAGTCCTGCCTTTCATCAATTTCTTTAGGAATTTATAAAACGTCAAAGAAGAAGAGTAAGAACGGAATCATCAGCCGGCTTTTTCCGTTTCTCCGTCAGCACAAGAGCGCACCTTGAGTTTAAAACTGGGTCATGTTGTGCTGGTTCACTCTGCCTTTTTGATCTCATAATTTGCAACAATTACTAGTGAAAGTTGTATTGTATTATCCCGCAGCTGTTGCACCCCCCCGCTGAGTTGTTGTTGTCATAATAAACCATTCTTCCGCGCGTTCACCGTCTCATTACGGCTGTCCGTCGTCGGTCT
>TU305887
CTGACAACCTCAGAGACACTTTGCCTTAGTTCAGCCGCAGTGCCAGGTTTACTTAGTCCCCTTGTAAATTTCCTGGTCTCCGGATGTACTGGAACTGACATTGTCGAGTCCTGCCTTTCATCAATTTCTTTAGGAATTTATAAAACGTCAAAGAAGAAGAGTAAGAACGGAATCATCAGCCGGCTTTTTCCGTTTCTCCGTCAGCACAAGAGCGCACCTTGAGTTTAAAACTGGGTCATGTTGTGCTGGTTCACTCTGCCTTTTTGATCTCATAATTTGCAACAATTACTAGTGAAAGTTGTATTGTATTATCCCGCAGCTGTTGCACCCCCCCGCTGAGTTGTTGTTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305888 False 532 lncRNA 0.46 1 50787571 50788102
TU305885 False 506 lncRNA 0.48 1 50787753 50788258
TU305886 False 409 lncRNA 0.45 1 50787753 50788161
TU305887 True 350 lncRNA 0.44 1 50787753 50788102

Neighbor

gene id symbol gene type direction distance location
LOC110520146 ino80d coding upstream 168810 50601983 ~ 50618761 (+)
LOC110520148 LOC106586260 coding upstream 185916 50595616 ~ 50601655 (+)
gpr1 LOC106586257 coding upstream 195266 50588958 ~ 50592305 (+)
osbpl6 LOC106586252 coding upstream 267706 50455039 ~ 50519865 (+)
agps LOC106586249 coding upstream 410481 50338167 ~ 50377090 (+)
LOC110520157 LOC106586094 coding downstream 169756 50958014 ~ 50959445 (+)
uggt2 LOC106586268 coding downstream 276916 51065174 ~ 51110275 (+)
LOC110520162 LOC106586269 coding downstream 360286 51148544 ~ 51199761 (+)
LOC110520163 LOC106586270 coding downstream 440227 51228485 ~ 51230831 (+)
LOC110520164 LOC100137092 coding downstream 470534 51258792 ~ 51262216 (+)
G269126 NA non-coding upstream 142379 50644993 ~ 50645192 (+)
G269085 NA non-coding upstream 256631 50527538 ~ 50530940 (+)
G268989 LOC106586251 non-coding upstream 344560 50440203 ~ 50443011 (+)
G269022 NA non-coding upstream 372028 50415338 ~ 50415543 (+)
G269019 NA non-coding upstream 377321 50410023 ~ 50410250 (+)
G269224 NA non-coding downstream 542 50788800 ~ 50790055 (+)
G269231 LOC106586263 non-coding downstream 16332 50804590 ~ 50809753 (+)
G269279 NA non-coding downstream 87031 50875289 ~ 50875499 (+)
G269289 NA non-coding downstream 104878 50893136 ~ 50893372 (+)
G269290 NA non-coding downstream 106029 50894287 ~ 50894921 (+)
hoxd3a hoxd3 other upstream 604545 50162278 ~ 50184327 (+)
G267529 NA other upstream 932069 49836617 ~ 49855502 (+)
G267381 NA other upstream 1231733 49554498 ~ 49555838 (+)
G267358 NA other upstream 1275096 49510803 ~ 49512475 (+)
G269291 rap2a other downstream 110331 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 785722 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2378694 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2433169 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 2503072 53291284 ~ 53339392 (+)

Expression


Co-expression Network