G269883


Basic Information

Item Value
gene id G269883
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50831640 ~ 50833105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU306615
GTCGGAAAACGATTGAATGTGTGGCTTATGCTAAGGGGTGAGTTCAGTGGGTTAAAAAGAATTGTCCTCAACACTCTCACATCATGTGAGCTTAGCGTCCAGTAGCACAAAGCCAGTGTGATGTCGTGGTCTAGAAGATTGACTATCCATCGGTCTCAATTATTGTTCTACTCCTCATTAAACCACATCCAATAACAAATAATTACATTTGCGCTGTATATTGGTTTAATCACGATCACATGATGCTAACCTAGTATGTGGAGAACCCTGAATGTGATTCAATCAACTCGTCCCTGACACAAAGGTCGTAGGTTGAAAGAGACTTGTATACTGGTATTGACCATACATCACTGTGGAGCCTGTCAAAAACAAACTGGAAATGATTTCTTGGTTGTTGACCTTAATCCCCATCCCTAGGAAGTACAGTGCCTTTAGCCCAGGATCTGCTTTCTCCCAGATCAGGTCTATTTGGACTGACTAACTGGGGATCTAGAGGAAACTCCTCTCATTGACCGCCATATTTAGTTCTTTAATAATTAAACAAGATAGTTGCCTTTATGTGTTTTATATTGACTTATTTATTTTCTTAAATACACATTCCTGTAGTTTAATTTCCATATAATAACTTTTGTGTAGTTACCGTTCAGCTaatactgtaaaaaaataaataaataattttttttaaaaaagtttATTGGAGTAGAATTGAATAACCAAACATTTTCCCAGTGGGAGATGTTGATGTTCCATAGCTCCATAAATACTTTAATATCGTCATACCTATTTAATTTGACAAACTTGATGCTAGCATTCTTTTGTTCTAGCGTGCCAATTCTCTTTGTGTTTGACGGTTTTGTAGGTTCAGTTAAACTGAAACTGGCCTTCCCTGTGGGGAGTACCCTGTAGAGTGACAGTGGATTTGTTGTGCTGAAGGTTAAGTCGTTTACACTAATCTGCAGGAGACACTTTGATTGGTCTTCTCCAGGAACGGAGCGTCTGTAGCTGTCATCATTTATTACCAGGAGGATTATGGGTAAATGAAAGGTTCCATGGGGCGGTACCACCAGCCGTGTCACTTCCTAGGGGAGACCTGCCCCCTCCTCACGCACCTGTTGACTTTCCCACTACACCCTGCCTTagccctaaccacagatctaggatcagatcaccTAACCGCAAATCCAAACCGTGACCATTAGGAGGATGGCGGTCAGAGGCTACGTCCACCTACTCCGTCATAGCCTAGTCTCCCTTCACTCTGTTGATGCCCACCACAGGGTCACATCCCAGGGCCATGTCCCATTACTCCTACCGCCTGTGTCTGTTCTgtgtttgactctctctctcttttccccagaCAGAGGCTGTCTCCCACACTGCTAAGTCATTAGTGAGGTGTTGTCATTTGGGATATAGGGCTTTCTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306615 True 1427 lncRNA 0.42 2 50831640 50833105

Neighbor

gene id symbol gene type direction distance location
LOC110520150 LOC106586262 coding downstream 43419 50665795 ~ 50788221 (-)
slc15a1a LOC106586093 coding downstream 166033 50652633 ~ 50665607 (-)
LOC110520149 stk24 coding downstream 195118 50619021 ~ 50636522 (-)
LOC110520143 LOC106586256 coding downstream 245745 50546066 ~ 50585895 (-)
LOC110505276 NA coding downstream 288208 50542986 ~ 50543432 (-)
LOC110520154 rap2a coding upstream 65452 50898557 ~ 50911701 (-)
LOC110520155 LOC106586265 coding upstream 80066 50912625 ~ 50951028 (-)
LOC110504222 LOC106586266 coding upstream 127754 50960859 ~ 51059220 (-)
dnajc3a dnajc3 coding upstream 278740 51111845 ~ 51126305 (-)
LOC110520160 LOC106586095 coding upstream 293495 51126600 ~ 51130404 (-)
G269866 NA non-coding downstream 52283 50779151 ~ 50779357 (-)
G269865 NA non-coding downstream 52747 50778669 ~ 50778893 (-)
G269817 NA non-coding downstream 128644 50702246 ~ 50702996 (-)
G269779 ino80d non-coding downstream 226104 50600978 ~ 50605536 (-)
G269762 NA non-coding downstream 299750 50531271 ~ 50531890 (-)
G269908 NA non-coding upstream 40496 50873601 ~ 50873941 (-)
G269919 NA non-coding upstream 58932 50892037 ~ 50892283 (-)
G269920 NA non-coding upstream 59556 50892661 ~ 50892890 (-)
G269845 NA non-coding upstream 60170 50893275 ~ 50894490 (-)
G269847 NA non-coding upstream 62131 50895236 ~ 50895829 (-)
LOC110520139 LOC106586251 other downstream 388768 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 930102 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 959995 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1264166 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1328669 49494001 ~ 49503025 (-)
fgf9 NA other upstream 640219 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 764294 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 1875078 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2416821 53249926 ~ 53251084 (-)

Expression


Co-expression Network