G269291 (rap2a)


Basic Information

Item Value
gene id G269291
gene name rap2a
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50898589 ~ 50900277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU305958
TTTGGGTGCCTAATGAAACAGTGTCACCATTCATttagggagggagaaagagtaaatggtcacataaaaaaatataaaattaaCAATGAAAAATGGTAACCTAGGGAAGGTCTGGTTCCCCGTGGCAACAACGACATACAGTTGAGACAGTGTCCAGACCCAGACGTGTATGTGTTTGGTTTGCACGTTTCCATCGTCTATTATAATCTCAAACGATGAAGTCCTTTTTTAAATTTACTAGCCATGCATACAGTTGACAATTCCACATGTGTTGAGTCAGTGTCTTCCTAGGAGCTGGCACTTTCCATACAAAATATTTACACTACCGTTAATTATAATtgttattcatcatcatcatcatcatcatcactattatTAGCCTACTATGAATTTCAATACTCTGAATACATAAAGAGTGGGATGTTGAGACAACGTCGCATCCCATTTCATTGTGATACCCAACCAAAAAAATACAATGTAGAGAATGATGAGTGATGACATCTTCATTCCTGAAAAGAAGACCATTTCTAGAGACAAGAGTCTGTTGAGATATTCAAACACTGAAAGATGGAGTCCTCCTTGTCCCATCCGAATGAAACTGTTACAATATTCAGGAATCTGTTGTCAGAACCTCCTGAAACCAGACACCTCTGCTACACTTATCAAAACAAAATAGGAAGGAGAAGACAACATTGTTTCAAGAATGACACTGACTTTTCCACCATTTTCTTCCCATTCCTCAAAACAACTAAAAAGGAAATTAGAGGGGAAAATATGGAGGCGCGTTCAAGTCACCTCTTTGGTTCTGTCCTAGTGatgtgcaacaacaaaaccctctctttctctgtacagGAAAACTTAGTACGCAAATCAATTACTCATCAATGTTTCAAACAAGTTGATCAGAGGGATTATCTCCTCCCCTCTATCTGCCGCTCTGCGCTGTCATGGTAACTTAAAATGGAGAAAGATGGCTCCAGCTTGATGTGCTCAGAGAAACTGGGTCATATCAACAAGACCAAAACAATGTCAAATAAACATTACCGAAGCCGATCCCAGAAAACTTAAAGACTACAAAACCTGTAATTCTGCACGGACGACTCAAGACATATTTTTTTTCTCCGCCAGAGAAAACAGGATAACATAAGGCGAGTGCACTTTTCTTTAGTCCGGTTTGTCAGTTTCTCTTGCGCAAATCCTTTGCATTCCTCATTTCATTCTATTAATTATTAACATATCATTATTATCAATTACATCATGACTGATTTTATGCACCAATGAGTTAAAATCCACCACAGTTCTACCATGAGTTTATTAATCATCCATGTTGTTGGTGTGAGTATAATCCTCCTCTCAGCGTACAGTATCTTGGTGTATGCAGacttcctctctcccctgtccccctgGCGTCCCCTAGGCTCTGGGGCTATTGTATATTGCAGGAGGAGCAGCATGGGTCATCCTTGTCTGGCTGGGCGGCGTAGTCCATCTGCCGAACTATCTCGGCGAACAGTTCGTCCACCATGGTTTTGCTCTTGGCCGAGGTCTCCATAAAGGGGCAGCCCCACTCCTCTGCCAGAGCCTGGCCCTCGCTGGCCGAcacctccctctcactctccaggTCCACCTTGTTCCCCACCAGGATCACTGGGACTTTCTCG

Function

symbol description
rap2a Enables GTPase activity; guanyl ribonucleotide binding activity; and magnesium ion binding activity. Involved in several processes, including actin cytoskeleton reorganization; microvillus assembly; and positive regulation of protein autophosphorylation. Acts upstream of or within establishment of protein localization. Located in plasma membrane and recycling endosome membrane.

NR:

description
PREDICTED: ras-related protein Rap-2a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305958 True 1661 TUCP 0.42 2 50898589 50900277

Neighbor

gene id symbol gene type direction distance location
LOC110520146 ino80d coding upstream 279828 50601983 ~ 50618761 (+)
LOC110520148 LOC106586260 coding upstream 296934 50595616 ~ 50601655 (+)
gpr1 LOC106586257 coding upstream 306284 50588958 ~ 50592305 (+)
osbpl6 LOC106586252 coding upstream 378724 50455039 ~ 50519865 (+)
agps LOC106586249 coding upstream 521499 50338167 ~ 50377090 (+)
LOC110520157 LOC106586094 coding downstream 57737 50958014 ~ 50959445 (+)
uggt2 LOC106586268 coding downstream 164897 51065174 ~ 51110275 (+)
LOC110520162 LOC106586269 coding downstream 248267 51148544 ~ 51199761 (+)
LOC110520163 LOC106586270 coding downstream 328208 51228485 ~ 51230831 (+)
LOC110520164 LOC100137092 coding downstream 358515 51258792 ~ 51262216 (+)
G269290 NA non-coding upstream 3668 50894287 ~ 50894921 (+)
G269289 NA non-coding upstream 5217 50893136 ~ 50893372 (+)
G269279 NA non-coding upstream 23090 50875289 ~ 50875499 (+)
G269231 LOC106586263 non-coding upstream 88836 50804590 ~ 50809753 (+)
G269224 NA non-coding upstream 108534 50788800 ~ 50790055 (+)
G269334 NA non-coding downstream 59221 50959498 ~ 50959805 (+)
G269336 LOC106586266 non-coding downstream 59715 50959992 ~ 50964940 (+)
G269356 NA non-coding downstream 84344 50984621 ~ 50985007 (+)
G269365 NA non-coding downstream 94334 50994611 ~ 50995038 (+)
G269366 NA non-coding downstream 95810 50996087 ~ 50996330 (+)
hoxd3a hoxd3 other upstream 715563 50162278 ~ 50184327 (+)
G267529 NA other upstream 1043087 49836617 ~ 49855502 (+)
G267381 NA other upstream 1342751 49554498 ~ 49555838 (+)
G267358 NA other upstream 1386114 49510803 ~ 49512475 (+)
LOC110520169 il1rl1 other downstream 673703 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2266675 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2321150 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 2391053 53291284 ~ 53339392 (+)
G272965 NA other downstream 2748548 53648825 ~ 53652431 (+)

Expression


Co-expression Network