G269336 (LOC106586266)


Basic Information

Item Value
gene id G269336
gene name LOC106586266
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50959992 ~ 50964940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU306006
GCAAACACATTCATCATTAATAAGATCCTCAATCCTCTTTCTGAatggccctagaggcaccagaacatcacatttaaGAACAGAGAAGACTTACAATATTGGACTCAAATATTGTCTCAAAACATTGGACTGAGGATAGAACACTCTCATCTATGATCTAGCTAGAGAGTCATAGATTTAATAAGAATATCAGACTTCGCTGCAGGTGATTGCTTAGAACAGATGTGAACCTTTTCCTTTCATACGGCTGGCACTCGAGTGGGGCACGATTAGTAGAAAAGCTCAGAGCTTTCacaatagaataataataatcagtTATTTAGGgaagaaatacagtatatatgtacgACAATGGGTTTTACATGACATTATATCCTGATAGTGTAACGATCCGTTTGTGGAGGTGGACAACTGTTTGTTCACATCAGCCAACAGTAAAAAATCAACAGTGATTTCACATTTCACTAAAGGTGCCTGTCTGTAGACAATAATAATCCAGACATCTGAACTTCCTCAAACAAACCCAGTAGGATTGGTACCACAAAGCAGGAGCATATAAAATAATACAGTACATTTTATGGTACCTGTCTGAGAAGCTATTCTCCTTGTTTGTGGGTATGagtcattttccttcctcatacCACAGCTAGGAGGAAATAAGCGGGATCTGTCGGGAGTAGACTAGACAgtagagtctgtctgtctgtctgtctggtggttCCTGTCTGGTGGTTCCACTTTTTTTTGCAATAAAATGAATGAGCTTTTTGAAAGAAGATGAGTCTTCATTCATTCAACTTATTAACTGCACCATGTTGAGAGTCAGGGCAATTTCCTGCATAGAGAGAAGCTTGTATTAGGCAGGTAATAGTCCAATTAGTGTCTTGTAAGCAGACCAATATGTCCTTCCCTTGTCACTGCTGAATAACAGCAAATGAAAGAGACTGATGATTGTACAGTGCATATACCTGTATATATAAACTGCTATTTCTGGACCAGAACATTCTGAATTATTCTCCCTGGTTCCCTTATTTCTCCCTTAGTAATAATCTCACTATAGCAACAGGAAAGGAACTTGAATATTTCCATTAACAACTAGTGTTATTCTCAATGGTCCTCTCCTTTCTACCTAATGTTCGTGTTTTACAATGCATATAATATATCTCACTGAAATGTAATCctcaggagacagacacacacatgaagTGAAACACATCCACTATACCACACTTCGTTATGATGCACGGTTATGAAAATATTGATGGAGAAAATACAGGCCAAAATCTTGCAAACACAACCAATGCTAATAATTCACGCAAACAAGTTTAATTTCGACAGTGCATGACCTACCGATGAAGATAGATGTTGGACGCCTGGTCACCTGACCTGGGACGGTGTTTATCTGGGCTGTTTGCTAACACGGACGAAGCTAGTGCTTGTATTGCATTTTAAAGGTCAAGGACCTCATGAATGCGGTTAAGTGTCGCTGGATAACTTTCCTAACGTCTATGGCTTCATGCCAATGATTCCAGGCAGAAAAGGGTCATGTTTGTTCAATGCATTTATTTTCTAATATCTGAAGTAGTATTCACCCAGCCTTGCAGAACCTGACAAGAACATTGCTGATAAAGTATAAGACATCAAATGGCATCAAGACTGTCCTTTTCATACACAACAATTTGAACAGGAACATACAGATACGTACATGTAGAAAGTTCTCCCTCGTGTGATGGTATTATAACCTTTTTCCTTTCAGACAAGCTCTCTTGTTTGCAATAAATAAATGCAAGATGACCTGTTTTTCAAAGATGTGCACTTAAGTTGAGTGGCAGTTGAAGTTCATTCAAATCCCTCTTTCACAACATGTCATGTCACAGGGCTTTGGGGATGGCAGGACAATATCTAGTGTGACACTCTCTTTTTAGGCTTGATTTCATGGCTGTATTTACACTGAGGCCTGATAAGGATAATAGGTTTGAAATAGTCATTTCAGACTTTTcagatgttgcgtcaatatacACATCACACTACCGTAAGTTTGAGCAGATAACAACTACATGAATATAAGCAGTTTTTTTCATCAGGGAGATTGCTTCACAGCACATTCCACATTCCCCCCAAAATAAAACTTGGTATTGTATCCATAATGTTGGTTTGAAAATGCTGGGGCAATGTATAAACATGGTGTGTTGGCTCACTGAAATTGCAGGCAAACTTGTGATCAATATACAATAAtggtacgcacgcacacacactccaatAATTGTATAGCTTGAACAATcacttaaaacaaaaacaaaaaacagtttCCTGCAAACAGATGCTGCATATTCCTGAATGAAAAATAATTTTCAATAGAGCTTTTCCATTTAGCAGGTTTTTTAGTCCAAGAGCAGGCCTAATCTGGATTAGGGATACCAACTCAAACTGTGATAATGGTTACTATTACATCACAGTCAATCAACTAACTGGATACAAACTAACTTAAACAACAAAAACTTCCACTCATCGGTTAAGGTTAATGGACCAAAGCTGTGCTCAGTGATCAGACAGACCTACATCTTCTGAAAAAATCAAGTAAAAACAGGATAAATGTGAAAATGAAAGCAGCAGCAAATTcatatttttataaaaaaaatattgtcattGGAGAGTTGAAATGttcacaacagaacaacagatcaGAATAGCAAATCCATGATTTAATCtaacatgacatcatcatcacaGCCATCTGCAAGTCATTCAACCGTTACAATTAGATGAATCTCGTTTGATACGTTCAAGTTTGTTTAATGTTCATTCAGAAGTTACCTGTGTTTTGAGGGGGACAATCAGACATGAAACTAGATGTGGTACATTTCATCTCCTTCCTACTACAGGAAACGACTGTATTCTGCTACCGTGTCATCTCAGGCTGTTATTCTGGTAGCATTTAGAACCCCCCTCGCAGCCCACAAAGCCGTTGGCGTGGGCTCCACAAACATGTTAAGCCACGGAGTGTGACGGGGTGAGCACGAGGGCCGAATGCTGATCACCTCATTGACAGTCAGTCCACACACCAACCACACTGACCTGGCTCCTCAGCCCTCACCTAGAGCATTTACCTAGTGGTTATCTTTACCTTCTGGAGAAGACTACTTAAACAATCCAAGCTTAACATTTTTGAAAAATCTTCCTTGAGGAGTTCTTTCCATTTGTAATGTGAAAGCTGAATGTGGTAAGTCTGGTCAGTGCAGAATAGAAATCAGGCTGGTTTTCTTCAGGGTAATCCTCTCTTTGTGAGTTTATGATTGACTTCACATTCCAACACACAGATAGTGGATGAACAGAAACAGCAGTTCCTCCGAGTTGAAACTTGAAAGGTGTTGCATGTAGACAAACTCTACTGAATATTGCACCCTAGAAAACATTTTTGCATCATAATCAAAACATCTGACATTATCTTGACTGACTACAGCTACACTATATTTGTGTGAGGGAAATGTCAATATAATTGAAACTGCCATGATAAAATGAAACTAAATACATTATCTTATTTCTGAGAAGTTGTCCATTTGCAAGGTCCCATTAAGAAAACAGTAGCTACGTAAACAAAGACAAATATTTTCTAAGTCGGTGTACTTTGGCTCTCATCATTTCTTTTGGAAGTAACTCTCCATCCTCAAACCGTCTCTCAGATATAATATGGACACATGACATGCGAGAATCAGCACTTTTATATTGTTTTCTGTTGAACTACTATATTCCTGCCAGTCGCAACAAAAAAACACGGATTGATATCCACCCCTTGACATTGAGTcccaataaaaatgtatttgctaGCAGCGTCTTTTGATTGTGTCTTCTTTCAGCTTAACTTACTGCCTTTAAAGAGTTATCATAATCTACATGATAATAAATAACCATGACTAAGAGGCAGGAAAGCAACGGAGCAGCAAAACAAttcattacaaataaatacattaaaccATCCATTTGAAGATCTAAGACACCAAAGGGCACTCCAAGGCAGAGCTTCTGTGATACTGACTCACAGACTTGGCAGTTTCATAACCAGAAAGAAACTTTAGCAGAGCGCTAGGATCACACTGAAGCTgagaaagagataaagatagagaTAGTAGACAGAAAAAgatagagcgatagagagagattgacagaggcagagagagaaagagtaccaTGTGAAATGATTCTGGAGGTGATCACCAGtgacctctctctgtgtgcgtggcCAGGGTAAGACCTCACCAGCGGGCCACCTGGCTGGTGTAGTCTTCAGTGGTCGTGGCCAGGTCGCCTCCGCCCCCGTACCCCCGGCGTCTGGGGAGTGAGGCCCTGCTCTGCTCCCTCTGCTCCCGAAGCCATCGGCGCTCCTCACGCCTCTTCAATCGCTCCGCCTGGTGCTCGCGCTGGCGGGTGTATTGGAAGCGCTGGAGGAACAGGTCCTTGGCATACTCGTACAGCTGCACGTCCAGATAGTTGAGCTCCTCGATGCGACGGCGCACAGCCTCACTCAGGTCCACGTTGGCGGCGCGCGTGCTGTTGATCTGAGTGAAGGCGGCGATGAAGCGCAGGCTGAACGTCCGCTCAAACAGGTACTGCGTCTTGCGCTGGAACTCTGTCAGTCCGTAGAAGGCCATGTTCTTCAGGTTGTTCATGGCGCTGCCCAGCAGGATGTGGTTGCGATCGCTCTCGTTCATGGAGGACAGGTTGTAGCAGCCTACCAGGTTGAGGTCGGCCAGCATGCGCACCTGTCGGTTGTTGGCCAGGTTGGACGGGCAGTCCATGAACTCGGTTAGGGTGACGCCCGACCAGTCGTCCCCGCTGTAGCAGGTGGGCAGTTCGTCCTGTGTGGGCGAGCGCCCGTCACACATGTGCAGGGAGGTCTTCCAGGTGGCACCTCGCTGCACGTGCTTCCACTCGCTCAGGTAGCGGGAGACGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306006 True 4949 lncRNA 0.42 1 50959992 50964940

Neighbor

gene id symbol gene type direction distance location
LOC110520157 LOC106586094 coding upstream 547 50958014 ~ 50959445 (+)
LOC110520146 ino80d coding upstream 341231 50601983 ~ 50618761 (+)
LOC110520148 LOC106586260 coding upstream 358337 50595616 ~ 50601655 (+)
gpr1 LOC106586257 coding upstream 367687 50588958 ~ 50592305 (+)
osbpl6 LOC106586252 coding upstream 440127 50455039 ~ 50519865 (+)
uggt2 LOC106586268 coding downstream 100234 51065174 ~ 51110275 (+)
LOC110520162 LOC106586269 coding downstream 183604 51148544 ~ 51199761 (+)
LOC110520163 LOC106586270 coding downstream 263545 51228485 ~ 51230831 (+)
LOC110520164 LOC100137092 coding downstream 293852 51258792 ~ 51262216 (+)
LOC110520165 LOC106586271 coding downstream 302133 51267073 ~ 51276411 (+)
G269334 NA non-coding upstream 187 50959498 ~ 50959805 (+)
G269290 NA non-coding upstream 65071 50894287 ~ 50894921 (+)
G269289 NA non-coding upstream 66620 50893136 ~ 50893372 (+)
G269279 NA non-coding upstream 84493 50875289 ~ 50875499 (+)
G269231 LOC106586263 non-coding upstream 150239 50804590 ~ 50809753 (+)
G269356 NA non-coding downstream 19681 50984621 ~ 50985007 (+)
G269365 NA non-coding downstream 29671 50994611 ~ 50995038 (+)
G269366 NA non-coding downstream 31147 50996087 ~ 50996330 (+)
G269374 NA non-coding downstream 41302 51006242 ~ 51006553 (+)
G269378 NA non-coding downstream 45815 51010755 ~ 51011018 (+)
G269291 rap2a other upstream 59715 50898589 ~ 50900277 (+)
hoxd3a hoxd3 other upstream 776966 50162278 ~ 50184327 (+)
G267529 NA other upstream 1104490 49836617 ~ 49855502 (+)
G267381 NA other upstream 1404154 49554498 ~ 49555838 (+)
LOC110520169 il1rl1 other downstream 609040 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 2202012 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 2256487 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 2326390 53291284 ~ 53339392 (+)
G272965 NA other downstream 2683885 53648825 ~ 53652431 (+)

Expression


Co-expression Network