G270105 (dct)


Basic Information

Item Value
gene id G270105
gene name dct
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51195332 ~ 51267591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU306844
CAAAGCACCTGCATGTCCGATTGAAGAATTTGATAGGCCACCTTTCTCGATCATCAACATTTCTCAACCTATATGGTCCGCCCCAGGGTTTGGTACTGACTCTGATGTCGGAGCAGTTTCCTCGTCCAGATAAAGTTCCACACACATTAGCAGGATCAGAGCCGAGAGCAGGGCAGCACTGCTTTGAGACGATCCCCTCCACCGTGCTGCAGACTCGAGGAAACTGAGCCTCCGTAGAATCGGGCCTTGTCACAAGACAAACCAGACCTAGCAACAGCGCCTTGATCATCTTCAACACCTCTTGTCCTCTTCTGGCCACTCACAAACCAGTTTGTACACTAGCACACAGCAATTACGTGCTCAATTATTTTCCCCTAAGGGTATGGAATCACATTTGTAACGCTCCTCAGTTGTGTATTCAACATTTGGCTACAGTCATAAATGTAATTTCACGAGGGACAGCCTGAGAGAAAGTACACTGTGATCCAGTCACTCCGTAGAA

Function

symbol description
dct Predicted to enable dopachrome isomerase activity. Predicted to be involved in developmental pigmentation; generation of neurons; and melanin biosynthetic process from tyrosine. Predicted to act upstream of or within melanin biosynthetic process. Predicted to be located in melanosome membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Is expressed in several structures, including eye; female organism; immature eye; integument; and neural crest. Human ortholog(s) of this gene implicated in oculocutaneous albinism. Orthologous to human DCT (dopachrome tautomerase).

NR:

description
L-dopachrome tautomerase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306844 True 502 lncRNA 0.48 2 51195332 51267591

Neighbor

gene id symbol gene type direction distance location
cldn10b LOC106586096 coding downstream 59871 51130633 ~ 51135461 (-)
LOC110520160 LOC106586095 coding downstream 64928 51126600 ~ 51130404 (-)
dnajc3a dnajc3 coding downstream 69027 51111845 ~ 51126305 (-)
LOC110504222 LOC106586266 coding downstream 136112 50960859 ~ 51059220 (-)
LOC110520155 LOC106586265 coding downstream 244304 50912625 ~ 50951028 (-)
LOC110520166 LOC106586272 coding upstream 9330 51276921 ~ 51389582 (-)
LOC110504232 LOC106586097 coding upstream 196620 51464211 ~ 51470676 (-)
fgf9 NA coding upstream 204557 51471899 ~ 51478510 (-)
LOC110520170 il1rl1 coding upstream 283106 51550697 ~ 51559339 (-)
il1rl1 il1rl1 coding upstream 329342 51596933 ~ 51619476 (-)
G270098 NA non-coding downstream 13790 51181089 ~ 51181542 (-)
G270091 NA non-coding downstream 23813 51170209 ~ 51171519 (-)
G270067 NA non-coding downstream 48044 51147017 ~ 51147288 (-)
G270057 NA non-coding downstream 57842 51136926 ~ 51137490 (-)
G269981 NA non-coding downstream 172038 51023084 ~ 51023294 (-)
G270243 NA non-coding upstream 123445 51391036 ~ 51391343 (-)
G270248 NA non-coding upstream 126822 51394413 ~ 51394635 (-)
G270254 NA non-coding upstream 130840 51398431 ~ 51398647 (-)
G270267 NA non-coding upstream 139004 51406595 ~ 51406812 (-)
G270286 LOC100194703 non-coding upstream 151843 51419434 ~ 51419773 (-)
LOC110520139 LOC106586251 other downstream 752460 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 1293794 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 1323687 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1627858 49563841 ~ 49608114 (-)
LOC110520182 NA other upstream 1440592 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 1982335 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 3412327 54679918 ~ 54682805 (-)

Expression


Co-expression Network