G270371 (il1rl1)


Basic Information

Item Value
gene id G270371
gene name il1rl1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51550751 ~ 51606548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU307167
TTGAACACTTGTTctctctcaaatacatcgttacagttgttggttagtaAGGAAGCACattttgccATTAGCATAAAAATGACATCAGTCAAAATACCTAAAAACAAGACATGGAatcaagaacaagataaaactaGCTGAAATTAGCCACTTActattccccacatggcagtttcttgtcattgttgctagccatccagaatcacaaaaACACACGGCCTTCTGCCACATTGTACACATCGTTTTTGTGACGTTCTCAGCTAACCTGTGTATATCTCTGCACAGCACTGGAATAATTAATGATATTTATATGAATGGAATAAGGATTTTCAGAGAACCCAGACCTCCACACGCACGTCAAGTCCTCAGACCTGAATGTTCACATAGAACAGTCATATTAACTGGTTGTCAAAACTAGTTGAGCGCGGCCAAGGCATCATGTAACGCACCCTCTTCCAGAAGCTTGAGTTGGGCAGCGTCGACCCACGCCTTCCCTCATGCCACATTAAGGGGGCACTCTTGCGGACCAGGTGCTGCAGGCCGGGGGGCAGGTGTGTGTAGCCACCCTCCCCCATGTCCCCCAGCTGGATGAGGATAACGTTCATCTCACTGTGGACCAGAGCCTGGAGGAGCCCCACCTGACAGTCATAGTCCTCCGCTGTGGTCAACGAAGACGAGTAGCCCCATTGGCCACATGACCCTTGACCTCCTGAGCCTGACCGTGTGCTTGAGCTAGGGGTCAGGATGACAATCAGCCTCCTGCTCAGTCGCATGCAGTCCTCCACCAAC

Function

symbol description
il1rl1 Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in asthma and coronary artery disease. Orthologous to human IL1RL1 (interleukin 1 receptor like 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307167 True 789 lncRNA 0.49 2 51550751 51606548

Neighbor

gene id symbol gene type direction distance location
LOC110520168 LOC106586274 coding upstream 18117 51504521 ~ 51532634 (+)
pdxka LOC106586273 coding upstream 50662 51490352 ~ 51500089 (+)
LOC110520165 LOC106586271 coding upstream 274340 51267073 ~ 51276411 (+)
LOC110520164 LOC100137092 coding upstream 288535 51258792 ~ 51262216 (+)
LOC110520163 LOC106586270 coding upstream 319920 51228485 ~ 51230831 (+)
LOC110520171 LOC106586099 coding downstream 14806 51621354 ~ 51624586 (+)
LOC110520174 LOC106586278 coding downstream 152708 51759256 ~ 51766986 (+)
LOC110520177 LOC106586282 coding downstream 774383 52380931 ~ 52442609 (+)
LOC110520178 LOC106582420 coding downstream 902227 52508775 ~ 52567291 (+)
LOC110520179 arl4c coding downstream 978463 52585011 ~ 52587048 (+)
G270369 NA non-coding upstream 814 51549729 ~ 51549937 (+)
G270363 NA non-coding upstream 12623 51537647 ~ 51538128 (+)
G270298 NA non-coding upstream 14376 51534387 ~ 51536375 (+)
G270337 NA non-coding upstream 77592 51472954 ~ 51473159 (+)
G270336 NA non-coding upstream 77806 51472586 ~ 51472945 (+)
G270451 NA non-coding downstream 76630 51683178 ~ 51683426 (+)
G270497 NA non-coding downstream 146138 51752686 ~ 51752919 (+)
G270483 NA non-coding downstream 161575 51768123 ~ 51769068 (+)
G270486 NA non-coding downstream 162921 51769469 ~ 51770130 (+)
G270484 NA non-coding downstream 164062 51770610 ~ 51771617 (+)
G269291 rap2a other upstream 650474 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 945935 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 1367725 50162278 ~ 50184327 (+)
G267529 NA other upstream 1695249 49836617 ~ 49855502 (+)
G267381 NA other upstream 1994913 49554498 ~ 49555838 (+)
acvr2aa LOC106586327 other downstream 1560404 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 1614879 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 1684782 53291284 ~ 53339392 (+)
G272965 NA other downstream 2042277 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 2050913 53657461 ~ 53658683 (+)

Expression


Co-expression Network