G270486


Basic Information

Item Value
gene id G270486
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51769469 ~ 51770130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU307295
ttcttgacctgactgcagttcggcgtcgtaactgacttcattgggcaaatgctcaccttcgatggccactggcacgctggagaagtgtgccctTAATGGACGAATCCCGATTTCGATTGTACCGGGCAGTTGTCAGACAGAAATGTACTGCATCAGAAAATCAGccagtatctgatgtgaccaccatttgcctcatacagCGTGACACATCCCCTTCGCATTAAtaaggttgttgattgtggcctgtggaatgttgtcccactccttttcaatggccGTTCGAacttgctggatattggcgggaactggaacacgctgttgtacacgtcgatccagagcatctcaaacatgctcaatgtgacatgtctggtgagtatgcagtccATGGAAGAATTGGGAAATGTTCAGctcccaggaattgtgtacagatccttgcgacatgaggCTGTGCAttctcatgctgaaacatgaggtgatggcggcggatgaatgacacgacagtgggcctcaagatctcgtcacggtatctctgtgtattcaatTTGCCATCaagaaaatgcaattgtgttcatcgtccgtagcttatgcctacccataccataaccccacactCGCCCAGTTGGAACCGAGaataatccgtgaagagcacgcTGCCCCAGtgg

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU307295 True 662 lncRNA 0.49 1 51769469 51770130

Neighbor

gene id symbol gene type direction distance location
LOC110520174 LOC106586278 coding upstream 2483 51759256 ~ 51766986 (+)
LOC110520171 LOC106586099 coding upstream 144883 51621354 ~ 51624586 (+)
LOC110520169 il1rl1 coding upstream 186902 51573980 ~ 51582567 (+)
LOC110520168 LOC106586274 coding upstream 236835 51504521 ~ 51532634 (+)
pdxka LOC106586273 coding upstream 269380 51490352 ~ 51500089 (+)
LOC110520177 LOC106586282 coding downstream 610801 52380931 ~ 52442609 (+)
LOC110520178 LOC106582420 coding downstream 738645 52508775 ~ 52567291 (+)
LOC110520179 arl4c coding downstream 814881 52585011 ~ 52587048 (+)
LOC110520180 LOC106586330 coding downstream 938241 52708371 ~ 52760376 (+)
LOC110520185 NA coding downstream 1104798 52874928 ~ 52942773 (+)
G270483 NA non-coding upstream 401 51768123 ~ 51769068 (+)
G270497 NA non-coding upstream 16550 51752686 ~ 51752919 (+)
G270451 NA non-coding upstream 86043 51683178 ~ 51683426 (+)
G270374 il1rl1 non-coding upstream 160851 51552112 ~ 51608618 (+)
G270371 il1rl1 non-coding upstream 162921 51550751 ~ 51606548 (+)
G270484 NA non-coding downstream 480 51770610 ~ 51771617 (+)
G270795 NA non-coding downstream 82617 51852747 ~ 51853056 (+)
G270862 NA non-coding downstream 162738 51932868 ~ 51936398 (+)
G271855 NA non-coding downstream 836144 52606274 ~ 52606501 (+)
G271858 NA non-coding downstream 837692 52607822 ~ 52608280 (+)
G269291 rap2a other upstream 869192 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 1164653 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 1586443 50162278 ~ 50184327 (+)
G267529 NA other upstream 1913967 49836617 ~ 49855502 (+)
acvr2aa LOC106586327 other downstream 1396822 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 other downstream 1451297 53174264 ~ 53235027 (+)
LOC110520190 LOC106586322 other downstream 1521200 53291284 ~ 53339392 (+)
G272965 NA other downstream 1878695 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 1887331 53657461 ~ 53658683 (+)

Expression


Co-expression Network