G271701


Basic Information

Item Value
gene id G271701
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52445302 ~ 52450465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU308583
CTTATTCAAAAGTTGtatttgaaccctaaatggttctcaagtagattactaagaaaagctcatccattgtttaaaatgTGCCTTTTTGCAtgtgtgcagattgccatgtctcatttttgattaattgaaaatagtgtcatgtattgtcatgttgtgtctttctgtcctttcctttcaccctgtctccctctgctggtcgtattaggttaccttttctcccccgctttcccccagctgttccttgtctcctcctaactacccattcaccccgtttcccacctgttccctttttccctctgattaggtccctatatctctctctgtttctgctcctgtctttgtcggattcttgtttgttgtgtttcatgcctgaaccagactatcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtctgtctgaacctacctatgtttggttattaaagtagctctgttaagttaattcgcttttgggtcctcattcactcaccgtgacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308583 True 515 lncRNA 0.43 2 52445302 52450465

Neighbor

gene id symbol gene type direction distance location
LOC110520175 LOC106586279 coding downstream 369626 51956334 ~ 52075676 (-)
LOC110520176 LOC106586280 coding downstream 602454 51817564 ~ 51844042 (-)
LOC100135875 LOC100135875 coding downstream 711003 51688835 ~ 51734299 (-)
LOC110520172 LOC106586277 coding downstream 764390 51630789 ~ 51680912 (-)
il1rl1 il1rl1 coding downstream 825826 51596933 ~ 51619476 (-)
LOC110520181 adprh coding upstream 236458 52686923 ~ 52692178 (-)
LOC110520182 NA coding upstream 254487 52693956 ~ 52708816 (-)
gtdc1 gtdc1 coding upstream 330316 52780781 ~ 52826389 (-)
zeb2a LOC106586328 coding upstream 377318 52827783 ~ 52875770 (-)
LOC110520193 LOC106586318 coding upstream 934076 53384541 ~ 53394318 (-)
G271340 NA non-coding downstream 425546 51933451 ~ 52019756 (-)
G271339 NA non-coding downstream 509056 51932618 ~ 51936246 (-)
G270819 NA non-coding downstream 571106 51873970 ~ 51874196 (-)
G270810 NA non-coding downstream 583266 51861721 ~ 51862036 (-)
G270806 NA non-coding downstream 585917 51859054 ~ 51859385 (-)
G271901 LOC100136012 non-coding upstream 184685 52635150 ~ 52635378 (-)
G271911 NA non-coding upstream 189029 52639494 ~ 52639813 (-)
G271930 NA non-coding upstream 203412 52653877 ~ 52654107 (-)
G271959 NA non-coding upstream 222228 52672693 ~ 52673115 (-)
G271968 NA non-coding upstream 224654 52675119 ~ 52682633 (-)
fgf9 NA other downstream 971163 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 1315992 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 2002430 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 2543764 49895327 ~ 49901575 (-)
G272713 LOC106586324 other upstream 799461 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 2229453 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 2653029 55068639 ~ 55122013 (-)
G275250 NA other upstream 2959678 55410143 ~ 55411487 (-)

Expression


Co-expression Network