G271878


Basic Information

Item Value
gene id G271878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52620771 ~ 52621041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU308766
ATTTTtggtatcagttcataaaccatgtgccatggaattggttaatcaaaaatctcttcccatctATTTTGCAacctatatggcacagctgtcaattttttggtcattaaattaaactggtatacttttttatttctcacagttttctttaagcaattttagtctttaatgcagggcagacagacaagttccttactttctccctcttccacttgcctcttctatttttgcggtaatgctgcaatgAGTTGATGTTCATTTTGGGTAGAgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308766 True 271 lncRNA 0.35 1 52620771 52621041

Neighbor

gene id symbol gene type direction distance location
LOC110520179 arl4c coding upstream 33723 52585011 ~ 52587048 (+)
LOC110520178 LOC106582420 coding upstream 53480 52508775 ~ 52567291 (+)
LOC110520177 LOC106586282 coding upstream 178162 52380931 ~ 52442609 (+)
LOC110520174 LOC106586278 coding upstream 853785 51759256 ~ 51766986 (+)
LOC110520171 LOC106586099 coding upstream 996185 51621354 ~ 51624586 (+)
LOC110520180 LOC106586330 coding downstream 87330 52708371 ~ 52760376 (+)
LOC110520185 NA coding downstream 253887 52874928 ~ 52942773 (+)
acvr2aa LOC106586327 coding downstream 503615 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 coding downstream 553223 53174264 ~ 53235027 (+)
LOC110520189 LOC106586324 coding downstream 614502 53235543 ~ 53253493 (+)
G271858 NA non-coding upstream 12491 52607822 ~ 52608280 (+)
G271855 NA non-coding upstream 14270 52606274 ~ 52606501 (+)
G270862 NA non-coding upstream 684373 51932868 ~ 51936398 (+)
G270795 NA non-coding upstream 767715 51852747 ~ 51853056 (+)
G270484 NA non-coding upstream 849154 51770610 ~ 51771617 (+)
G271885 NA non-coding downstream 4061 52625102 ~ 52625348 (+)
G271900 LOC100136012 non-coding downstream 14054 52635095 ~ 52635354 (+)
G271910 NA non-coding downstream 18584 52639625 ~ 52639935 (+)
G271955 NA non-coding downstream 50347 52671388 ~ 52671864 (+)
G271982 NA non-coding downstream 71262 52692303 ~ 52695698 (+)
LOC110520169 il1rl1 other upstream 1042088 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 1720494 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 2015955 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 2437745 50162278 ~ 50184327 (+)
G267529 NA other upstream 2765269 49836617 ~ 49855502 (+)
LOC110520190 LOC106586322 other downstream 670289 53291284 ~ 53339392 (+)
G272965 NA other downstream 1027784 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 1036420 53657461 ~ 53658683 (+)

Expression


Co-expression Network