G271900 (LOC100136012)


Basic Information

Item Value
gene id G271900
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52635095 ~ 52635354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU308788
catcagaccacatgaccttctcccattcctcctctggatcatccagatggtcattggcaaacttcagacgggcctggacatgcgctggcttgagcagggggaccttgcgtgcgctgcaggattttaatccatgacggcatagtgtgttactaatggttttctttgagactgtggtcccagctctcttcagttcattgaccaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgcccca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308788 True 260 lncRNA 0.52 1 52635095 52635354

Neighbor

gene id symbol gene type direction distance location
LOC110520179 arl4c coding upstream 48047 52585011 ~ 52587048 (+)
LOC110520178 LOC106582420 coding upstream 67804 52508775 ~ 52567291 (+)
LOC110520177 LOC106586282 coding upstream 192486 52380931 ~ 52442609 (+)
LOC110520174 LOC106586278 coding upstream 868109 51759256 ~ 51766986 (+)
LOC110520171 LOC106586099 coding upstream 1010509 51621354 ~ 51624586 (+)
LOC110520180 LOC106586330 coding downstream 73017 52708371 ~ 52760376 (+)
LOC110520185 NA coding downstream 239574 52874928 ~ 52942773 (+)
acvr2aa LOC106586327 coding downstream 489302 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 coding downstream 538910 53174264 ~ 53235027 (+)
LOC110520189 LOC106586324 coding downstream 600189 53235543 ~ 53253493 (+)
G271885 NA non-coding upstream 9747 52625102 ~ 52625348 (+)
G271878 NA non-coding upstream 14054 52620771 ~ 52621041 (+)
G271858 NA non-coding upstream 26815 52607822 ~ 52608280 (+)
G271855 NA non-coding upstream 28594 52606274 ~ 52606501 (+)
G270862 NA non-coding upstream 698697 51932868 ~ 51936398 (+)
G271910 NA non-coding downstream 4271 52639625 ~ 52639935 (+)
G271955 NA non-coding downstream 36034 52671388 ~ 52671864 (+)
G271982 NA non-coding downstream 56949 52692303 ~ 52695698 (+)
G272018 NA non-coding downstream 132571 52767925 ~ 52768246 (+)
G272020 NA non-coding downstream 133604 52768958 ~ 52769168 (+)
LOC110520169 il1rl1 other upstream 1056412 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 1734818 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 2030279 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 2452069 50162278 ~ 50184327 (+)
G267529 NA other upstream 2779593 49836617 ~ 49855502 (+)
LOC110520190 LOC106586322 other downstream 655976 53291284 ~ 53339392 (+)
G272965 NA other downstream 1013471 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 1022107 53657461 ~ 53658683 (+)

Expression


Co-expression Network